Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000238-TA|BGIBMGA000238-PA|IPR002007|Haem peroxidase,
animal, IPR010255|Haem peroxidase
         (485 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    29   1.5  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    29   1.5  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    29   1.9  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    28   3.4  
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    28   3.4  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    27   5.9  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    27   7.7  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    27   7.7  

>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 201 FWRFHNYVAQ-QLANLNPSWDDEQLFYTARDIVVAFHLQMFYYEFLPEVLGKDHMIEDEI 259
           F R+HN V   +  + NP  ++E+ F + +D+V     Q +   +  +   K + + +E+
Sbjct: 289 FARYHNGVCYLRFDDTNPEAEEERYFESIKDLVAWLGFQPYKITYSSDYFDKLYELAEEL 348

Query: 260 I 260
           I
Sbjct: 349 I 349


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 416 QVYETAEDIELMAEQLQEIRKASLALLLCYVGDDVEK 452
           Q+Y+   D  L  E++ E+ + SL LL CY GD+ ++
Sbjct: 624 QLYDLKRDGTLRTEEVVELSE-SLILLCCYEGDEKDE 659


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
            Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 8    RLTSSGKEYPLARHIKNNLLTVGLATDAKLTQLSAYYIEFMAIDVVSAHDILNYV 62
            RL S GK+Y L   + ++L+   +A       +     +F+A  VV A ++L Y+
Sbjct: 948  RLRSQGKKYQLVEAVVDDLIGAKVAPVIARQVMQRVVKKFIAGQVVEATELLEYL 1002


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 9/61 (14%)

Query: 396 HVDFDDLTDHISDEKIRQLKQVYETAEDIELMAEQLQEIRKASLALLLCYVGDDVEKIQP 455
           H DF ++T+H SD         Y  A ++     QL    +A LA+L    G  ++ I P
Sbjct: 49  HYDFPEMTEHHSDR-----ASSYANANNVNSTQPQLVSSEQALLAIL----GGGLQSITP 99

Query: 456 N 456
           N
Sbjct: 100 N 100


>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/56 (23%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 210 QQLANLNPSWDDEQLFYTARDIVVAFHLQMFYYEFLPEVLGKDHMIED-EIILCNS 264
           QQ+  L    D ++      D+++  H +++Y+ ++ +V G+D ++ D + + C+S
Sbjct: 172 QQIPFLKRILDMDKFLLVQSDLIIPHHHELYYF-YINKVQGRDGLLFDFDKLSCSS 226


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 16/59 (27%), Positives = 36/59 (61%), Gaps = 5/59 (8%)

Query: 398 DFDDLTDHISDE---KIRQLKQVYETAEDIEL-MAEQLQEIRKASLALLLCYVGDDVEK 452
           DF+D++D   ++   K+ +L Q+Y   ++  + + E+L++++  SL++ L    DD+ K
Sbjct: 137 DFEDISDIKLEQLSAKLNELHQIYRLRKEKNIEIKEELKKLQD-SLSIKLSMPADDLSK 194


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 5/41 (12%)

Query: 384 KYRD-FCSGYSKKHVDFDDLTD--HISDEKIRQLKQVYETA 421
           ++RD + SGY KKH D D   D  H  DE  R LK+   T+
Sbjct: 222 RHRDKYDSGYFKKHYDDDMRFDQGHFQDE--RDLKKYVRTS 260


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 284 AYASRWFHTIQYGAQKLFDKNFNFIKEVPMVNF 316
           A A R++ T +Y   +LF++ FN    + M NF
Sbjct: 244 AVAIRFWQTDKYDKNELFEQWFNRASAIAMANF 276


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.137    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,415,367
Number of Sequences: 5004
Number of extensions: 107894
Number of successful extensions: 268
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 265
Number of HSP's gapped (non-prelim): 8
length of query: 485
length of database: 2,362,478
effective HSP length: 75
effective length of query: 410
effective length of database: 1,987,178
effective search space: 814742980
effective search space used: 814742980
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)