Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000238-TA|BGIBMGA000238-PA|IPR002007|Haem peroxidase,
animal, IPR010255|Haem peroxidase
         (485 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01420.1 68416.m00065 pathogen-responsive alpha-dioxygenase, ...    36   0.079
At1g73680.1 68414.m08532 pathogen-responsive alpha-dioxygenase, ...    36   0.079
At3g16370.1 68416.m02071 GDSL-motif lipase/hydrolase family prot...    30   3.9  
At5g50700.1 68418.m06282 short-chain dehydrogenase/reductase (SD...    29   6.9  
At5g50600.1 68418.m06268 short-chain dehydrogenase/reductase (SD...    29   6.9  
At4g08900.1 68417.m01467 arginase identical to Swiss-Prot:P46637...    29   6.9  
At1g73160.1 68414.m08462 glycosyl transferase family 1 protein c...    29   6.9  
At2g40390.1 68415.m04980 expressed protein                             29   9.1  
At2g36340.1 68415.m04460 DNA-binding storekeeper protein-related...    29   9.1  

>At3g01420.1 68416.m00065 pathogen-responsive alpha-dioxygenase,
           putative similar to pathogen-inducible alpha-dioxygenase
           [Nicotiana attenuata] GI:12539609; contains Pfam profile
           PF03098: Animal haem peroxidase
          Length = 639

 Score = 35.5 bits (78), Expect = 0.079
 Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 12/130 (9%)

Query: 126 TTFFDLSNIYEFSAGSLNQVRSYEGGQLKYEVVNGRQFPSDASDNTTCFIKQAISTGCTR 185
           T ++D S IY  ++ +L++VR+Y+ G+LK             S+ T   +        + 
Sbjct: 216 TPWWDSSVIYGSNSKTLDRVRTYKDGKLK------------ISEETGLLLHDEDGLAISG 263

Query: 186 TVPNGILGTNLFTTWFWRFHNYVAQQLANLNPSWDDEQLFYTARDIVVAFHLQMFYYEFL 245
            + N   G +     F + HN V   L + +   +DE L+  AR +  A   ++   ++ 
Sbjct: 264 DIRNSWAGVSALQALFIKEHNAVCDALKDEDDDLEDEDLYRYARLVTSAVVAKIHTIDWT 323

Query: 246 PEVLGKDHMI 255
            ++L  D ++
Sbjct: 324 VQLLKTDTLL 333


>At1g73680.1 68414.m08532 pathogen-responsive alpha-dioxygenase,
           putative similar to pathogen-inducible alpha-dioxygenase
           [Nicotiana attenuata] GI:12539609; contains Pfam profile
           PF03098: Animal haem peroxidase
          Length = 631

 Score = 35.5 bits (78), Expect = 0.079
 Identities = 20/66 (30%), Positives = 32/66 (48%)

Query: 187 VPNGILGTNLFTTWFWRFHNYVAQQLANLNPSWDDEQLFYTARDIVVAFHLQMFYYEFLP 246
           + N   G +L    F + HN V   L    P +DDE+L+ TAR +  A   ++   ++  
Sbjct: 257 IRNSWSGFSLLQALFVKEHNSVCDMLKERYPDFDDEKLYRTARLVTAAVIAKVHTIDWTI 316

Query: 247 EVLGKD 252
           E+L  D
Sbjct: 317 ELLKTD 322


>At3g16370.1 68416.m02071 GDSL-motif lipase/hydrolase family protein
           similar to family II lipases EXL3 GI:15054386, EXL1
           GI:15054382, EXL2 GI:15054384 from [Arabidopsis
           thaliana]; contains Pfam profile: PF00657 Lipase
           Acylhydrolase with GDSL-like motif
          Length = 353

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 17/48 (35%), Positives = 25/48 (52%)

Query: 138 SAGSLNQVRSYEGGQLKYEVVNGRQFPSDASDNTTCFIKQAISTGCTR 185
           SAGS + V++Y    L Y+V     + S   DN + FIKQ  + G  +
Sbjct: 165 SAGSSDFVQNYYVNPLLYKVYTVDAYGSFLIDNFSTFIKQVYAVGARK 212


>At5g50700.1 68418.m06282 short-chain dehydrogenase/reductase (SDR)
           family protein contains oxidoreductase, short chain
           dehydrogenase/reductase family domain, Pfam:PF00106
          Length = 349

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)

Query: 326 GDIMSTVTRGSYYQATGKGDSSVDPDITDVGLGP 359
           G I S +T+G Y+  +G+G+  V+ D+ DV +GP
Sbjct: 227 GYIESELTQGKYF--SGEGELIVNQDMRDVQVGP 258


>At5g50600.1 68418.m06268 short-chain dehydrogenase/reductase (SDR)
           family protein similar to sterol-binding dehydrogenase
           steroleosin GI:15824408 from [Sesamum indicum]
          Length = 349

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)

Query: 326 GDIMSTVTRGSYYQATGKGDSSVDPDITDVGLGP 359
           G I S +T+G Y+  +G+G+  V+ D+ DV +GP
Sbjct: 227 GYIESELTQGKYF--SGEGELIVNQDMRDVQVGP 258


>At4g08900.1 68417.m01467 arginase identical to Swiss-Prot:P46637
           arginase (EC 3.5.3.1) [Arabidopsis thaliana]
          Length = 342

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 328 IMSTVTRGSYYQATGKGDSSVDPDI-TDVGLGPVQEIFDIPTAD 370
           I   +  GS   AT +G    DP + TDVG  PVQEI D    D
Sbjct: 89  IREAIWCGSTNSATEEGKELKDPRVLTDVGDVPVQEIRDCGVDD 132


>At1g73160.1 68414.m08462 glycosyl transferase family 1 protein
           contains Pfam profile: PF00534 Glycosyl transferases
           group 1
          Length = 486

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 185 RTVPNGILGTNLFTTWFWRFHNYVAQQLANLNPSWDDEQ 223
           + VPNG +       W+   H+ + Q+L+N  PS D +Q
Sbjct: 187 KMVPNGDIAVTWHGIWYEIMHSNLFQELSNDRPSSDLQQ 225


>At2g40390.1 68415.m04980 expressed protein
          Length = 496

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 188 PNGILGTNLFTTWFWRFHNY---VAQQLANLNPSWDDEQLFYT 227
           P+ +      T   W+ H Y   VA ++ ++N S +DE+LF++
Sbjct: 209 PSPLFSYAFSTQGLWKVHMYCPVVAMEMESVNSSLNDERLFFS 251


>At2g36340.1 68415.m04460 DNA-binding storekeeper protein-related
           contains similarity to storekeeper protein [Solanum
           tuberosum] gi|14268476|emb|CAC39398; contains PF04504:
           Protein of unknown function, DUF573
          Length = 414

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 325 VGDIMSTVTRGSYYQATGKG---DSSVDPDITDVGLGPVQEIFDIPTADLAKGRY 376
           VG +  T+  G  +Q  GK    D S + D+ ++G+  +QEIF   T   + GRY
Sbjct: 310 VGVMEDTLDSGISFQGLGKNGVKDKSEEDDVVELGV--LQEIFKEDTFFQSLGRY 362


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.137    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,142,788
Number of Sequences: 28952
Number of extensions: 531720
Number of successful extensions: 1136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1132
Number of HSP's gapped (non-prelim): 9
length of query: 485
length of database: 12,070,560
effective HSP length: 84
effective length of query: 401
effective length of database: 9,638,592
effective search space: 3865075392
effective search space used: 3865075392
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)