GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000238-TA|BGIBMGA000238-PA|IPR002007|Haem peroxidase,
animal, IPR010255|Haem peroxidase
         (485 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0445 - 3513733-3513819,3514392-3514613,3514730-3514999,351...    32   1.2  

>12_01_0445 -
           3513733-3513819,3514392-3514613,3514730-3514999,
           3515033-3517110,3517649-3517976,3519136-3519255,
           3519299-3519352,3520115-3520154,3520344-3520411
          Length = 1088

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 396 HVDFDDLTDHISDEKIRQLKQVYETAEDIELMAEQLQEIRKASLALLLCYVGDDVEKI 453
           HV   +L D +  EK+RQ + V E    +E+  E   E  K SL   LC    +VE++
Sbjct: 675 HVIVKELEDEVEKEKMRQEELVAE----LEMKMETAVEAIKESLEAQLCAANTEVERL 728


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.137    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,457,473
Number of Sequences: 37544
Number of extensions: 619882
Number of successful extensions: 1126
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1126
Number of HSP's gapped (non-prelim): 1
length of query: 485
length of database: 14,793,348
effective HSP length: 85
effective length of query: 400
effective length of database: 11,602,108
effective search space: 4640843200
effective search space used: 4640843200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)