Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000237-TA|BGIBMGA000237-PA|undefined
         (1018 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          25   2.0  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    24   6.0  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    24   6.0  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   8.0  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    23   8.0  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 31/113 (27%), Positives = 44/113 (38%), Gaps = 5/113 (4%)

Query: 732 KCQLMESLLQTPTNASE----MEYMNDIPRQSEPQHAKETIVRDNQTHRELSPKTFVRVQ 787
           K  L + LL  PT        +E MN      +   AKE+I   +  +    P    RV+
Sbjct: 681 KNMLSDELLAQPTIKENFHTALEIMNRAVNIGQQPGAKESISYLSMENNAPPPPPPPRVE 740

Query: 788 KENTLIVNVAKIEDRISNLEAKR-PERKTSRDKMNERQMKVKQVIEIPLQRLQ 839
                +  V+KI     +L AKR  ER      +  +  + KQV  I    LQ
Sbjct: 741 SFAETVRTVSKIPPLYKDLVAKRCEERGILFVPIPNKYYEAKQVYRIGSNGLQ 793


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 687 YMKSKNLEILDRHYIGKPGNLKLDNYQFDPMIVPP 721
           Y +++N+   +  Y GK G  + ++Y  DP  + P
Sbjct: 418 YYQNENMLQKNAEYSGKVGYYENNHYNGDPNYISP 452


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 687 YMKSKNLEILDRHYIGKPGNLKLDNYQFDPMIVPP 721
           Y +++N+   +  Y GK G  + ++Y  DP  + P
Sbjct: 366 YYQNENMLQKNAEYSGKVGYYENNHYNGDPNYISP 400


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 737 ESLLQTPTNASEMEYMNDIPRQSEPQHAKET 767
           + L Q+ T  +   Y +  P  S PQH+  +
Sbjct: 21  QQLFQSATTEAPAAYSSSSPSGSSPQHSSSS 51


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 737 ESLLQTPTNASEMEYMNDIPRQSEPQHAKET 767
           + L Q+ T  +   Y +  P  S PQH+  +
Sbjct: 21  QQLFQSATTEAPAAYSSSSPSGSSPQHSSSS 51


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.132    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,167
Number of Sequences: 317
Number of extensions: 9178
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 5
length of query: 1018
length of database: 114,650
effective HSP length: 64
effective length of query: 954
effective length of database: 94,362
effective search space: 90021348
effective search space used: 90021348
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)