Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000237-TA|BGIBMGA000237-PA|undefined
(1018 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 30 1.9
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 29 2.5
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 29 2.5
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 29 3.3
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 29 4.3
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 28 5.7
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 28 5.7
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 28 5.7
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 28 5.7
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 28 7.6
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 28 7.6
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 494 LKRTATRASKLSQCETLNEQLNAQNSDCSVGTLVPSEVGL--KKSSTHANLNQKLSSSAQ 551
L+R R + +S E ++LN + S TL+P + G KK+++ ++L+ LS +
Sbjct: 1444 LERKRRRRNSISYTELTLDELNTVDDPSS--TLMPRKRGRPRKKTNSGSSLSTPLSQESS 1501
Query: 552 FAIEGGSNT 560
A G NT
Sbjct: 1502 LARSGRKNT 1510
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 29.5 bits (63), Expect = 2.5
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 670 HSGFKFEFDKYPQIVTNYMKSKNLEILDRHYIGKPGNLKLDNYQFDPMIVPPIQEERCET 729
HS F F+ ++ V + +KS+ L+ DR+ + + N D Y F + I E+ +
Sbjct: 532 HSTFLFQNYEFSDNVISLLKSRRLDKSDRNELAEDLNSD-DRYNFISRLKKFIFMEKEKN 590
Query: 730 CVKCQLMESLLQTPTNASEMEYMNDIP 756
+ L +S+ T +AS E+ + P
Sbjct: 591 GLSRSLSKSITFTLDSASVSEFEDVYP 617
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 29.5 bits (63), Expect = 2.5
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Query: 453 RLLVILTYFIRCGEVKRTDFLYQNVPVKEIRVVNVDQTEGGLKRTATRASKLSQCETLNE 512
R+L+ T F R E + + N+P K IR V+V+ + A ++S ++L +
Sbjct: 478 RILLASTVFRRTKETRVNNLPIVNLPPKTIRTVSVNLLP---EERALYNEQMSSAQSLVD 534
Query: 513 QLNAQNSDCS-VGTLVPSEVGLKKSSTHANLNQKLSSSAQFAIEGGSN 559
+ D S G L+ S + L++ H L + S F I N
Sbjct: 535 NYFNNDHDLSRYGFLLVSLLRLRQFCCHPWLVKSSSLDNSFRIRDSEN 582
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/72 (25%), Positives = 30/72 (41%)
Query: 480 KEIRVVNVDQTEGGLKRTATRASKLSQCETLNEQLNAQNSDCSVGTLVPSEVGLKKSSTH 539
K+ V ++TE AS +S ++E+ A+N+D S+VG +K S
Sbjct: 369 KDSTSVEAEKTETDEPAVGKGASDVSDTAEISEKTEAKNADSEANLEEKSDVGEEKESKD 428
Query: 540 ANLNQKLSSSAQ 551
N L +
Sbjct: 429 ENNKASLHKDVE 440
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 804 SNLEAKRPERKTSRDKMNERQMKVKQVIEIPLQRLQVMGRPCLLR---SGYDASLLGGIT 860
+N AKR +RK R K ER K +++E+ ++ P L + Y S+ +T
Sbjct: 47 NNDSAKREKRKKQRQKQKER--KRAKLLELQDTNASIIQSPDTLSDLLNNYIKSIYSDLT 104
Query: 861 DHYVPDLVLQGTLAE 875
D + D V++ + E
Sbjct: 105 DVELSDKVIKASYIE 119
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/62 (32%), Positives = 26/62 (41%)
Query: 155 SKPLNVPTMNEEGALSLSSSMGRGDSDPPGRKLSISSNGSWQRRTFQNMATRFDLGHKSS 214
S P N P LS+S + GD PG LS+SS+ S + + L SS
Sbjct: 2 SSPNNQPLSCSLRQLSISPTAPPGDVGTPGSLLSLSSSSSSNTDSSGSSLGSLSLNSNSS 61
Query: 215 SS 216
S
Sbjct: 62 GS 63
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 930 LVGSMLDALPIM-WKAKVPAHECLSFLEGKLREFCVL 965
LVGS+L +LPI+ + A P + L LR+ C+L
Sbjct: 159 LVGSLLSSLPIIGYSAYSPVKAAVRNLADSLRQECIL 195
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 495 KRTATRASKLSQCETLNEQLNAQNSDCSVGT-LVPSEVGLKK-SSTHANLN 543
++T+ +K+++C LNEQLN ++ + T PS V L++ +ST L+
Sbjct: 1406 QKTSELEAKVAECHQLNEQLNKPSATPTATTQSEPSTVSLEEFNSTKEELS 1456
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 28.3 bits (60), Expect = 5.7
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 170 SLSSSMGRGDSDPPGRKLSISSNGSWQRRTFQNMATRFDLGHKSSSSLSV-PTAFSNGTS 228
S SSS S R S SS+GS T + + S+SS++V TA+S+ +S
Sbjct: 535 SSSSSRSGSSSSSSSRSGSTSSSGSSHTITSTSQSVHTSGSSTSTSSVAVTSTAYSSSSS 594
Query: 229 ATS 231
++S
Sbjct: 595 SSS 597
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 27.9 bits (59), Expect = 7.6
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 131 RRISRGERKNDR-REAESCSYLRNESKPLNVPTMNEEGALSLS-SSMGRGDSDPPGRKLS 188
RR R E R RE+ SY R + +P ++ SL SS+GR S PP R+ S
Sbjct: 50 RRRRRDESDFRRHRESRERSY-REDERPRRERRYDDYEPRSLRYSSVGRSRSPPPSRERS 108
Query: 189 ISS 191
+ S
Sbjct: 109 VRS 111
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 677 FDKYPQIVTNYMKSKNLEILDRHYIGKPGNLKLDNYQFDPMIVPPIQ 723
F Y TN+ ++ L I +++ + K NL +Y+ +++ PIQ
Sbjct: 313 FSVYQVFCTNFPNAQQLIIDNQNQLLKVANLLEPSYELPALLIKPIQ 359
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.132 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,375,963
Number of Sequences: 5004
Number of extensions: 179712
Number of successful extensions: 486
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 482
Number of HSP's gapped (non-prelim): 12
length of query: 1018
length of database: 2,362,478
effective HSP length: 80
effective length of query: 938
effective length of database: 1,962,158
effective search space: 1840504204
effective search space used: 1840504204
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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