Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000237-TA|BGIBMGA000237-PA|undefined
         (1018 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g21810.1 68414.m02729 expressed protein                             32   2.2  
At3g12080.1 68416.m01504 GTP-binding family protein contains Pfa...    31   5.2  
At4g23880.1 68417.m03433 expressed protein                             30   6.8  
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea...    30   9.0  
At1g27490.1 68414.m03351 hypothetical protein similar to MYB tra...    30   9.0  

>At1g21810.1 68414.m02729 expressed protein
          Length = 628

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 24/112 (21%), Positives = 58/112 (51%), Gaps = 11/112 (9%)

Query: 736 MESLLQTPT-----NASEMEYMNDIPRQSEPQHAKETIVRDNQTHRELSPKTFVRVQKEN 790
           ME L+  PT     N+ +   ++ + +  + Q  K+ + R+ +  RE   +  + ++   
Sbjct: 249 MERLVALPTETQAKNSKDGYELSLMEKLEKIQAEKDDLEREVKCCREAEKRLSLEIE--- 305

Query: 791 TLIVNVAKIEDRISNLEAKRPERKTSRDKMNERQMKVK---QVIEIPLQRLQ 839
            ++ +  ++ED +  +EA++ E KTS D + ++  + +   Q ++  L++LQ
Sbjct: 306 AVVGDKMELEDMLKRVEAEKAELKTSFDVLKDKYQESRVCFQEVDTKLEKLQ 357


>At3g12080.1 68416.m01504 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 663

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 23/96 (23%), Positives = 43/96 (44%)

Query: 762 QHAKETIVRDNQTHRELSPKTFVRVQKENTLIVNVAKIEDRISNLEAKRPERKTSRDKMN 821
           Q+A++    D     + S    V  ++   ++ + A    R   +E +  E K +R K  
Sbjct: 85  QYAEDNFADDYSDDEDDSIDISVLEKEARDIVRDYATTLSRELKIEDETIEGKETRRKGK 144

Query: 822 ERQMKVKQVIEIPLQRLQVMGRPCLLRSGYDASLLG 857
                 +Q+ E  LQR+ ++GRP + +S     L+G
Sbjct: 145 RLAKNTQQIPEHLLQRVAIVGRPNVGKSALFNRLVG 180


>At4g23880.1 68417.m03433 expressed protein 
          Length = 199

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 6/80 (7%)

Query: 765 KETIVRDNQTHRELSPKTFVRVQKENTLIVN----VAKIEDRISNLEAKRPERKTSRDKM 820
           K+T+  D+    EL PK     +KE+  +V     V +++ +++  EA+R   K   D +
Sbjct: 100 KKTVSFDDD--HELKPKENPLEEKESLKMVEGKEEVVRVKIKMTKHEAQRLLSKCKNDSV 157

Query: 821 NERQMKVKQVIEIPLQRLQV 840
            + +  + Q+  +P+ +LQV
Sbjct: 158 LKLEHLMDQIAHVPVHQLQV 177


>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
           family protein similar to Pop3 (GI:3434986)
           [Schizosaccharomyces pombe]; contains Pfam PF00400: WD
           domain, G-beta repeat (6 copies, 2 weak);
          Length = 312

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 7/65 (10%)

Query: 882 DLRRDLDLTSHLNKTVECSLQSVAIVGDTNS----WEVRIVGRDCCSGGMSPLVGSMLDA 937
           + +R+    S +N  V    Q+  I GD N     W++R    D CS  + P VG+ + +
Sbjct: 117 ECQREFRSVSPVNTVVLHPNQTELISGDQNGNIRVWDLRA---DLCSCELVPEVGTPIRS 173

Query: 938 LPIMW 942
           L +MW
Sbjct: 174 LTVMW 178


>At1g27490.1 68414.m03351 hypothetical protein similar to MYB
           transcription factor isolog (AC002335)
          Length = 164

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 19/75 (25%), Positives = 34/75 (45%)

Query: 79  YLYKGPSSDASVLGEMIFGAVAMNCRNVSLKIHVMDEPRRLMCTKIFFVPTSRRISRGER 138
           + Y  PS+  S  G  + G  +    +   K+ V  + R      I+FV  ++ +   +R
Sbjct: 72  FCYAPPSTKDSRFGIHVQGKPSGFLADEQNKVVVCCKWRSDSINTIYFVGENKHVQVDQR 131

Query: 139 KNDRREAESCSYLRN 153
           + D    +SCS+L N
Sbjct: 132 RGDLTLGQSCSFLMN 146


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.132    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,674,046
Number of Sequences: 28952
Number of extensions: 926896
Number of successful extensions: 2327
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2322
Number of HSP's gapped (non-prelim): 8
length of query: 1018
length of database: 12,070,560
effective HSP length: 88
effective length of query: 930
effective length of database: 9,522,784
effective search space: 8856189120
effective search space used: 8856189120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)