GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000237-TA|BGIBMGA000237-PA|undefined
         (1018 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    30   1.9  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    29   2.5  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    29   2.5  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    29   3.3  
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe...    29   4.3  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    28   5.7  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         28   5.7  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    28   5.7  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    28   5.7  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    28   7.6  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    28   7.6  

>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 494  LKRTATRASKLSQCETLNEQLNAQNSDCSVGTLVPSEVGL--KKSSTHANLNQKLSSSAQ 551
            L+R   R + +S  E   ++LN  +   S  TL+P + G   KK+++ ++L+  LS  + 
Sbjct: 1444 LERKRRRRNSISYTELTLDELNTVDDPSS--TLMPRKRGRPRKKTNSGSSLSTPLSQESS 1501

Query: 552  FAIEGGSNT 560
             A  G  NT
Sbjct: 1502 LARSGRKNT 1510


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 670 HSGFKFEFDKYPQIVTNYMKSKNLEILDRHYIGKPGNLKLDNYQFDPMIVPPIQEERCET 729
           HS F F+  ++   V + +KS+ L+  DR+ + +  N   D Y F   +   I  E+ + 
Sbjct: 532 HSTFLFQNYEFSDNVISLLKSRRLDKSDRNELAEDLNSD-DRYNFISRLKKFIFMEKEKN 590

Query: 730 CVKCQLMESLLQTPTNASEMEYMNDIP 756
            +   L +S+  T  +AS  E+ +  P
Sbjct: 591 GLSRSLSKSITFTLDSASVSEFEDVYP 617


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 4/108 (3%)

Query: 453 RLLVILTYFIRCGEVKRTDFLYQNVPVKEIRVVNVDQTEGGLKRTATRASKLSQCETLNE 512
           R+L+  T F R  E +  +    N+P K IR V+V+      +  A    ++S  ++L +
Sbjct: 478 RILLASTVFRRTKETRVNNLPIVNLPPKTIRTVSVNLLP---EERALYNEQMSSAQSLVD 534

Query: 513 QLNAQNSDCS-VGTLVPSEVGLKKSSTHANLNQKLSSSAQFAIEGGSN 559
                + D S  G L+ S + L++   H  L +  S    F I    N
Sbjct: 535 NYFNNDHDLSRYGFLLVSLLRLRQFCCHPWLVKSSSLDNSFRIRDSEN 582


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/72 (25%), Positives = 30/72 (41%)

Query: 480 KEIRVVNVDQTEGGLKRTATRASKLSQCETLNEQLNAQNSDCSVGTLVPSEVGLKKSSTH 539
           K+   V  ++TE         AS +S    ++E+  A+N+D        S+VG +K S  
Sbjct: 369 KDSTSVEAEKTETDEPAVGKGASDVSDTAEISEKTEAKNADSEANLEEKSDVGEEKESKD 428

Query: 540 ANLNQKLSSSAQ 551
            N    L    +
Sbjct: 429 ENNKASLHKDVE 440


>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 5/75 (6%)

Query: 804 SNLEAKRPERKTSRDKMNERQMKVKQVIEIPLQRLQVMGRPCLLR---SGYDASLLGGIT 860
           +N  AKR +RK  R K  ER  K  +++E+      ++  P  L    + Y  S+   +T
Sbjct: 47  NNDSAKREKRKKQRQKQKER--KRAKLLELQDTNASIIQSPDTLSDLLNNYIKSIYSDLT 104

Query: 861 DHYVPDLVLQGTLAE 875
           D  + D V++ +  E
Sbjct: 105 DVELSDKVIKASYIE 119


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/62 (32%), Positives = 26/62 (41%)

Query: 155 SKPLNVPTMNEEGALSLSSSMGRGDSDPPGRKLSISSNGSWQRRTFQNMATRFDLGHKSS 214
           S P N P       LS+S +   GD   PG  LS+SS+ S    +  +      L   SS
Sbjct: 2   SSPNNQPLSCSLRQLSISPTAPPGDVGTPGSLLSLSSSSSSNTDSSGSSLGSLSLNSNSS 61

Query: 215 SS 216
            S
Sbjct: 62  GS 63


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 930 LVGSMLDALPIM-WKAKVPAHECLSFLEGKLREFCVL 965
           LVGS+L +LPI+ + A  P    +  L   LR+ C+L
Sbjct: 159 LVGSLLSSLPIIGYSAYSPVKAAVRNLADSLRQECIL 195


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 495  KRTATRASKLSQCETLNEQLNAQNSDCSVGT-LVPSEVGLKK-SSTHANLN 543
            ++T+   +K+++C  LNEQLN  ++  +  T   PS V L++ +ST   L+
Sbjct: 1406 QKTSELEAKVAECHQLNEQLNKPSATPTATTQSEPSTVSLEEFNSTKEELS 1456


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 170 SLSSSMGRGDSDPPGRKLSISSNGSWQRRTFQNMATRFDLGHKSSSSLSV-PTAFSNGTS 228
           S SSS     S    R  S SS+GS    T  + +        S+SS++V  TA+S+ +S
Sbjct: 535 SSSSSRSGSSSSSSSRSGSTSSSGSSHTITSTSQSVHTSGSSTSTSSVAVTSTAYSSSSS 594

Query: 229 ATS 231
           ++S
Sbjct: 595 SSS 597


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 131 RRISRGERKNDR-REAESCSYLRNESKPLNVPTMNEEGALSLS-SSMGRGDSDPPGRKLS 188
           RR  R E    R RE+   SY R + +P      ++    SL  SS+GR  S PP R+ S
Sbjct: 50  RRRRRDESDFRRHRESRERSY-REDERPRRERRYDDYEPRSLRYSSVGRSRSPPPSRERS 108

Query: 189 ISS 191
           + S
Sbjct: 109 VRS 111


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/47 (27%), Positives = 25/47 (53%)

Query: 677 FDKYPQIVTNYMKSKNLEILDRHYIGKPGNLKLDNYQFDPMIVPPIQ 723
           F  Y    TN+  ++ L I +++ + K  NL   +Y+   +++ PIQ
Sbjct: 313 FSVYQVFCTNFPNAQQLIIDNQNQLLKVANLLEPSYELPALLIKPIQ 359


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.132    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,375,963
Number of Sequences: 5004
Number of extensions: 179712
Number of successful extensions: 486
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 482
Number of HSP's gapped (non-prelim): 12
length of query: 1018
length of database: 2,362,478
effective HSP length: 80
effective length of query: 938
effective length of database: 1,962,158
effective search space: 1840504204
effective search space used: 1840504204
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)