GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000237-TA|BGIBMGA000237-PA|undefined
         (1018 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0361 - 15168735-15168754,15168783-15169248                       31   4.7  
03_03_0050 - 14086954-14087079,14087152-14088045                       31   6.2  
01_01_0473 - 3478660-3480338,3480507-3480609                           31   6.2  

>06_02_0361 - 15168735-15168754,15168783-15169248
          Length = 161

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 693 LEILDRHYIGKPGNLKLDNYQFDPMIVPPIQEERCETCVKCQLMESLLQT 742
           LE  D H+I K     L+ +  +P   PPI+ E C +C +  +++S  +T
Sbjct: 13  LEQDDLHFIQKDYGETLELHSKEPPSQPPIEPEPCPSCHQDVVLDSCQET 62


>03_03_0050 - 14086954-14087079,14087152-14088045
          Length = 339

 Score = 30.7 bits (66), Expect = 6.2
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 464 CGEVKRTDFLYQNVPVKEIRVVNVDQTEGGLKRTATRASKLSQCETLNEQLNAQNSDCSV 523
           C   +RTD  +   P+K I    + +     K TA + ++  Q E    Q+  +  + + 
Sbjct: 262 CSHCQRTDHTFPTCPLKHIEFDLLRKKIRKTKNTAQKNAEEEQTEVQRRQIKGKKQEATT 321

Query: 524 GTLVPSEVGLKKSST 538
             L+  + G KK  T
Sbjct: 322 QVLM-EQKGTKKRKT 335


>01_01_0473 - 3478660-3480338,3480507-3480609
          Length = 593

 Score = 30.7 bits (66), Expect = 6.2
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 159 NVPT-MNEEGALSLSSSMGRGDSDPPGRKLSISSNGSWQRRTFQNMATRFDLGHKSSSSL 217
           N+P+ +  +G+LS+S S     S PP  K         Q+R  +  A  FD+   S  S 
Sbjct: 96  NIPSSLQSQGSLSISESDSETQSAPPTPKPDSEETTPKQKR--KPRAAGFDVFLGSGGSS 153

Query: 218 SVPTAFSNGTSATSCD 233
            +    S+G+S++S +
Sbjct: 154 DISKKGSDGSSSSSSE 169


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.132    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,596,934
Number of Sequences: 37544
Number of extensions: 1106736
Number of successful extensions: 2383
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2382
Number of HSP's gapped (non-prelim): 3
length of query: 1018
length of database: 14,793,348
effective HSP length: 89
effective length of query: 929
effective length of database: 11,451,932
effective search space: 10638844828
effective search space used: 10638844828
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 65 (30.3 bits)