Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000237-TA|BGIBMGA000237-PA|undefined
(1018 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20600| Best HMM Match : zf-C3HC4 (HMM E-Value=0.65) 111 4e-24
SB_54232| Best HMM Match : Pkinase (HMM E-Value=1.1e-39) 33 1.2
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15) 33 1.2
SB_12899| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 2.0
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 2.7
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 4.7
SB_54122| Best HMM Match : RNA_pol_Rpb1_4 (HMM E-Value=8) 31 6.2
SB_40646| Best HMM Match : eIF-5a (HMM E-Value=0.87) 31 6.2
SB_28402| Best HMM Match : ResIII (HMM E-Value=0.061) 31 6.2
SB_20161| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 6.2
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07) 31 6.2
SB_15788| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 8.2
SB_2401| Best HMM Match : TSP_1 (HMM E-Value=0) 30 8.2
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 30 8.2
SB_41667| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 8.2
>SB_20600| Best HMM Match : zf-C3HC4 (HMM E-Value=0.65)
Length = 963
Score = 111 bits (266), Expect = 4e-24
Identities = 64/180 (35%), Positives = 104/180 (57%), Gaps = 12/180 (6%)
Query: 317 AAEDAAKWLTDLMYGPRL-QPMWLNLVTSEKPGASNKMAESLLSDLCSVLAVGDTKNTNF 375
A E+ K + + PRL +P+WLN++T + ++ E + + L+ + + T+F
Sbjct: 266 AVENFCKEICGQLVAPRLKEPVWLNMMTFQDH--RTELCEKFMDQFNTCLSQCNNRETSF 323
Query: 376 FISTLVTYVLTYHLGWVSTVSPYDS-------EVHQTAATKLNDSKRPYNVLWAQLNDLC 428
F+++L+T VLT+HL WV TV P + + H + L PYN LWAQL+DL
Sbjct: 324 FLASLLTAVLTHHLAWVPTVMPAGAAPSRTYLDKHSSKTLDLLVQSHPYNPLWAQLSDLY 383
Query: 429 GNIGFPPRAARTIISGTTNTQFVNRLLVILTYFIRCGEVKRTDFLYQNVPVKEIRVVNVD 488
G IG P + +RTI+ G N++ VN+++ IL+YFIRC EV ++ P++ I VN++
Sbjct: 384 GAIGSPLKLSRTIVVG-KNSKLVNQVIYILSYFIRCTEVFE-HTIHCEEPLQTIADVNIE 441
Score = 35.5 bits (78), Expect = 0.22
Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 14/153 (9%)
Query: 860 TDHYVPDLVLQGTLAEPNAWETDLRRDLDLTSHLNKTVECSLQSVAIVGDTNSWEVRIVG 919
++ Y PD VLQG ++ + L DL L+ + + ++V I+ DT++W ++
Sbjct: 737 SETYHPDFVLQGLPSKD--FLPSLYGDLRLSLQHSVIDDPVTEAVCIIADTDTWTCELIS 794
Query: 920 RDCCSGGMSPLVGSMLDALPIMWKAKVPAHECLSFLEG----KLREFCVLSKTLAEMLMS 975
+ S + PI + LS + G ++ V+S+ L +
Sbjct: 795 ANKSKRNSS---SEAVTVQPIEVSNLI--FSMLSSVSGLSDVRMSAEFVVSEWLRDRKRP 849
Query: 976 TDFCDIATLTKSLNVDMNDVPLLMAVATTHTPQ 1008
++A K+L +D +D+ LL+AVA+ H PQ
Sbjct: 850 ITKPELA---KTLGIDDSDMMLLLAVASAHAPQ 879
Score = 34.7 bits (76), Expect = 0.38
Identities = 62/248 (25%), Positives = 96/248 (38%), Gaps = 38/248 (15%)
Query: 16 LRFCQITSEQVRLLLFKECDWRGRKILFDS------------SSIQKVP-AGKNDKPTFR 62
L F + +R+L+F++CD +G+ +LFDS SS K+P A K T
Sbjct: 22 LAFPLLEPSDIRVLVFRDCDRKGKTLLFDSKVANKQNENSQGSSSAKIPTADTTKKTTPG 81
Query: 63 QTDELPCIVEVTDGFSYLYKGPSSDASVLGEMIFGAVAMNCRNVSLKIHV------MDEP 116
++DE C + + S + L + A + N SL V + P
Sbjct: 82 KSDEGKCPRSKPPHKRRILRMRSLICTRLFFVQASACSHNAFVASLSPTVRRHKWALRSP 141
Query: 117 RRLMCTKIF------FVP---TSRRISRG--ERKNDRREAESCSYLRNESKPLNVP---- 161
R+L+ +K+F F+P +S RI + + S L S P+ VP
Sbjct: 142 RQLLLSKVFALKPRIFIPHCCSSSRIETDSVSLSSQNGSPKDASLLMATSHPMAVPGTPA 201
Query: 162 ----TMNEEGALSLSSSMGRGDSDPPGRKLSISSNGSWQRRTFQNMATRFDLGHKSSSSL 217
+ G ++ S S S S GS+QRR +++ T D G S
Sbjct: 202 IPIEPEEDSGFMASIDSNSFAGSMTSLYTPSSSPCGSFQRRLYRSQVTSIDSGFNSRKRD 261
Query: 218 SVPTAFSN 225
V A N
Sbjct: 262 DVGEAVEN 269
>SB_54232| Best HMM Match : Pkinase (HMM E-Value=1.1e-39)
Length = 1123
Score = 33.1 bits (72), Expect = 1.2
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 703 KPGNLK-LDNYQFDPMIVPPIQEERCETCVKCQLME-SLLQTPTNASEMEYMNDIPRQSE 760
+P LK DN Q D ++ P +R +T QL +L TP + E +N++P +E
Sbjct: 866 RPAPLKPRDNLQTDTIVNPTEPFKRFQTYKVSQLRRLPILSTPAECEDPEQINELPSLTE 925
Query: 761 PQHAK 765
Q K
Sbjct: 926 KQPTK 930
>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
Length = 2110
Score = 33.1 bits (72), Expect = 1.2
Identities = 15/59 (25%), Positives = 31/59 (52%)
Query: 740 LQTPTNASEMEYMNDIPRQSEPQHAKETIVRDNQTHRELSPKTFVRVQKENTLIVNVAK 798
L+TP N +Y ++PR +E ++ + +I + + +L+PKT ++ V A+
Sbjct: 1832 LRTPLNTPLAQYPTNVPRANEKRNVEMSITKQGKELAKLTPKTVASTTEQAIAAVITAQ 1890
>SB_12899| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 667
Score = 32.3 bits (70), Expect = 2.0
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 773 QTHRELSPKTFVRVQKENTLIVNVAKIEDRISNLEAKRPERKTSRDKMNERQMKVKQVIE 832
QT +E K +R Q EN+L ED+ S+++ K+ + +KMN+++M+ + +E
Sbjct: 154 QTQQENDEKE-IRGQGENSL-----PGEDKASSIDGKKEDLNEEENKMNKKEMR-DEDLE 206
Query: 833 IPLQRLQVMGRPC 845
P+ ++ + C
Sbjct: 207 SPMSDIEANSKVC 219
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 31.9 bits (69), Expect = 2.7
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 637 ENKIEKCTKDNCEKSDSPSKCCGQTLQHSKPIKHSGFKFEFDKYPQIVTNYMKS---KNL 693
EN + T D SD+ S + ++ KP H+ P I +N K+ N
Sbjct: 1034 ENSHKNSTSDL--HSDNLSTIVIEAIESDKPNHHTSVDNCLKLLPNITSNSEKTCRDSNQ 1091
Query: 694 EILDRHYIGKPGNLKLDNYQF 714
+++RH G GNLK N F
Sbjct: 1092 GVIERHTCGARGNLKCRNCGF 1112
>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1711
Score = 31.1 bits (67), Expect = 4.7
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
Query: 724 EERCETCVKCQLMESLLQTPTNASEMEYMNDIPRQSEPQHAKETIVRDNQTHRELSPKTF 783
+E ETC K + L+ +Y + ++ E H ET+ R N+ EL
Sbjct: 1299 KELYETCNKLENEIGTLRESREELSKKYTQSVAKEKELTHLVETL-RSNKKQLEL----L 1353
Query: 784 VRVQKENTLIVNVAKIEDRISNLEAKRPERKTSRDKMNERQMKVKQVIEIPLQRLQ 839
V K +++V ++ + S LE R E TS + ER Q+ + L+ L+
Sbjct: 1354 VEEMKNESMLVE-EQLNESQSELETTR-ESCTSMNSDLERTCDELQIAQNELKELR 1407
>SB_54122| Best HMM Match : RNA_pol_Rpb1_4 (HMM E-Value=8)
Length = 127
Score = 30.7 bits (66), Expect = 6.2
Identities = 14/57 (24%), Positives = 33/57 (57%), Gaps = 6/57 (10%)
Query: 800 EDRISNLEAKRPERKTSRDKMNERQMKVKQVIEIPLQRLQVMGRPCLLRSGYDASLL 856
ED+ S+++ K+ + +KMN+++M+ + +E P+ ++ + C YD+ L+
Sbjct: 35 EDKASSIDGKKEDLNEEENKMNKKEMR-DEDLESPMSDIEANSKVC-----YDSQLI 85
>SB_40646| Best HMM Match : eIF-5a (HMM E-Value=0.87)
Length = 209
Score = 30.7 bits (66), Expect = 6.2
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Query: 737 ESLLQTPTNASEMEYMNDIPRQSEPQHAKETIVRDNQTHRELSPKTFVRVQKENTLIVNV 796
+ +L E+E +Q + KE VR N+ EL QK+ L
Sbjct: 37 DKMLDMRKRVFELETNEKCMQQLLQEREKELQVRQNKIS-ELQTLYDTCNQKKTELYTQA 95
Query: 797 AKIEDRISNLEAKRPERKTSRDKMNE 822
AK ED++ LE R E T + + +
Sbjct: 96 AKAEDKVGQLENIRKENVTEQATLKD 121
>SB_28402| Best HMM Match : ResIII (HMM E-Value=0.061)
Length = 337
Score = 30.7 bits (66), Expect = 6.2
Identities = 17/64 (26%), Positives = 34/64 (53%)
Query: 765 KETIVRDNQTHRELSPKTFVRVQKENTLIVNVAKIEDRISNLEAKRPERKTSRDKMNERQ 824
KE I + ++ R+LSPK Q+ + N+ + +E + +RK +DK ++ +
Sbjct: 25 KEHIAQRRRSLRKLSPKINNNSQQNIQQVSNLGDEKKAKDTIENEDSKRKRHKDKDHDEE 84
Query: 825 MKVK 828
++VK
Sbjct: 85 LEVK 88
>SB_20161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 475
Score = 30.7 bits (66), Expect = 6.2
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 758 QSEPQHAKETIVRDNQTHRELSPKTFVRVQKENTLIVNVAKIEDRISNLEAK 809
Q+E A + +V N+T R L + V +K T + V+K ++ + +L+A+
Sbjct: 45 QTEFAKASDELVESNETIRTLETELAVSKEKHRTCALEVSKRDETVLSLQAE 96
>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
Length = 2128
Score = 30.7 bits (66), Expect = 6.2
Identities = 30/133 (22%), Positives = 61/133 (45%), Gaps = 6/133 (4%)
Query: 714 FDPMIVPPIQEERCETCVKCQLMESLLQ-TPTNASEM--EYMN-DIPRQSEPQHAKETIV 769
FD P+ ER E Q+ ++Q P+ ++ +Y + + R P++ +
Sbjct: 1341 FDFRSQSPLVGEREEKQPSPQITRKIVQEAPSERAQSPRDYRHSEEKRGPSPRNMRAASP 1400
Query: 770 RDNQTHRELSPKTFVRVQKENTLIVNVAKIEDRISNLEAKRPE--RKTSRDKMNERQMKV 827
RD+ T +++ ++ V V+KE V+V DR + E R R+ R ++ E +
Sbjct: 1401 RDHTTEKQIVVESIVPVEKEPVPEVDVLSALDRNAEEERLRDAAYREKLRKEVEESNRRQ 1460
Query: 828 KQVIEIPLQRLQV 840
++ + ++QV
Sbjct: 1461 REEARYLMDQMQV 1473
>SB_15788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1163
Score = 30.3 bits (65), Expect = 8.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 803 ISNLEAKRPERKTSRDKMNERQMKVKQVIEIP 834
+ +EAK RK +++K+N +Q K + E+P
Sbjct: 890 VQQIEAKTCHRKVTKNKINNKQSKARDKSEVP 921
>SB_2401| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 818
Score = 30.3 bits (65), Expect = 8.2
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 843 RPCLLRSGYDASLLGGITDHYVPDLV--LQGTLAEPNAW 879
+PCL + G+++S + G D Y+ DL+ L+ P +W
Sbjct: 567 KPCLNKGGFESSSIIGDEDEYMKDLLSFLKPVQQSPTSW 605
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 30.3 bits (65), Expect = 8.2
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 468 KRTDFLYQNVPVKEIRVVNVDQTEGGLKRTATRASKLSQCETLNEQLNAQNSDCSVGTLV 527
++ + QN +K V V++ E + T+ + KLSQ E + +QL+ ++ + TLV
Sbjct: 4219 EKEELAQQNAELKMKLEVKVNECEELERTTSDLSKKLSQAELIVQQLSIESDAPAAQTLV 4278
Query: 528 PSEVGLKKSSTHANLNQ 544
++ +K + L+Q
Sbjct: 4279 -QQLQQEKDDLKSKLDQ 4294
>SB_41667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 605
Score = 30.3 bits (65), Expect = 8.2
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 748 EMEYMNDIPRQS-EPQHAKETIVRDNQTHRELSPKTFVRVQKENTLIVNVAKIEDRISNL 806
E Y+++ ++ E + + I ++N+ R+ K +++ TL+ NV + RI
Sbjct: 198 EFSYLDEEEKEKGENRDERRWIEKENRAMRQKRKKE--EIKRLRTLVDNVYACDPRIKKF 255
Query: 807 EAKRPERKTSRDKMNERQMK 826
+ + ERK + K E K
Sbjct: 256 KEEEKERKLAEKKAKEDAAK 275
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.132 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,337,437
Number of Sequences: 59808
Number of extensions: 1298021
Number of successful extensions: 3614
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 3594
Number of HSP's gapped (non-prelim): 28
length of query: 1018
length of database: 16,821,457
effective HSP length: 89
effective length of query: 929
effective length of database: 11,498,545
effective search space: 10682148305
effective search space used: 10682148305
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 65 (30.3 bits)
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