GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000237-TA|BGIBMGA000237-PA|undefined
         (1018 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    25   2.4  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   9.5  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 774 THRELSPKTFVRVQKENTLIV 794
           T+ EL+P TF+ V + NT +V
Sbjct: 326 TNTELNPNTFILVAENNTTMV 346


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.4 bits (48), Expect = 9.5
 Identities = 8/32 (25%), Positives = 20/32 (62%)

Query: 263 LGLALLITMTDSSDMDLVRRCVEHSPQLQAMV 294
           +G++  ++ T +++   +R+C E SP  Q ++
Sbjct: 234 VGVSNFLSSTRTAETGTIRKCDESSPHDQVII 265


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.132    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 274,302
Number of Sequences: 429
Number of extensions: 11704
Number of successful extensions: 22
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 2
length of query: 1018
length of database: 140,377
effective HSP length: 65
effective length of query: 953
effective length of database: 112,492
effective search space: 107204876
effective search space used: 107204876
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)