Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000236-TA|BGIBMGA000236-PA|IPR006092|Acyl-CoA
dehydrogenase, N-terminal, IPR006091|Acyl-CoA dehydrogenase/oxidase,
central region, IPR006090|Acyl-CoA dehydrogenase, type 1,
IPR009100|Acyl-CoA dehydrogenase/oxidase, middle and N-terminal,
IPR009075|Acyl-CoA dehydrogenase/oxidase C-terminal,
IPR006089|Acyl-CoA dehydrogenase
         (416 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   3.1  
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    22   9.3  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 2/65 (3%)

Query: 340 CDNGHVNSKDCAGVILYCAEKATQVALDAIQILGGNGYINDYPTGRILRDAKLYEIGAGT 399
           C  G       AG  L CA       L +   L  NG  N+ P+  +        IG G 
Sbjct: 38  CATGSNGLPAGAGSNLLCASNGLVTTLASGSSL--NGLTNNVPSNGLSSSGPFSSIGGGI 95

Query: 400 SEVRR 404
           S  +R
Sbjct: 96  SASKR 100


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 47  FDFAQKELAPKAAEIDKENNFKELRPFWKKLGD 79
           +DF++     K  E++ +   K L+P  K L D
Sbjct: 118 YDFSETLTRAKFEELNNDQFLKTLKPVKKVLED 150


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.135    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,041
Number of Sequences: 317
Number of extensions: 4033
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 2
length of query: 416
length of database: 114,650
effective HSP length: 58
effective length of query: 358
effective length of database: 96,264
effective search space: 34462512
effective search space used: 34462512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)