GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000236-TA|BGIBMGA000236-PA|IPR006092|Acyl-CoA
dehydrogenase, N-terminal, IPR006091|Acyl-CoA dehydrogenase/oxidase,
central region, IPR006090|Acyl-CoA dehydrogenase, type 1,
IPR009100|Acyl-CoA dehydrogenase/oxidase, middle and N-terminal,
IPR009075|Acyl-CoA dehydrogenase/oxidase C-terminal,
IPR006089|Acyl-CoA dehydrogenase
         (416 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    36   0.011
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr...    30   0.69 
SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa...    29   0.91 
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    27   6.4  
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    27   6.4  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    26   8.5  

>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 35.9 bits (79), Expect = 0.011
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 139 KSKYLPKLCSGEHIGALA---MSEPGSGSDVVSM-KLRAEKKGDYYVLNGNKFWITN--G 192
           K  +  KL SGE + A     M    + + V    +LR E    ++ +NGNK  ++N   
Sbjct: 167 KDYHRQKLLSGEILDAEEDEPMPNDANPTHVEEQERLRKETIAAFHDVNGNKDAVSNESD 226

Query: 193 PDADVLVVYAKTNWSTSKQQHGISAFLIE 221
            D D LV   KT     +++HG   FL+E
Sbjct: 227 EDGDFLVKKEKTKKQLEEEEHGYERFLLE 255


>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 113 GGIALSYGAHSNLCVNQINRNGTEEQKSKYLPKLCSGEHIGALAMSEPGSGSDVVSM 169
           GG A+    H  L   ++    TE+   K  PK+   E   A+ +S+P +GS +V +
Sbjct: 462 GGSAVHLTTHDKLA--KLVEALTEQYYKKQFPKITQSELNAAVVVSKPAAGSCIVQL 516


>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 396

 Score = 29.5 bits (63), Expect = 0.91
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 37  EEQQQLRKMVFDFAQKELAPKAAEIDKENNFK-ELRPFWKKLGD 79
           EE   L   + D  ++EL     E+D+ENN+K  LR  + +L D
Sbjct: 72  EEDPDLEAYLSDLEREELEHSLEELDEENNYKLHLRYSFSQLQD 115


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 155  LAMSEPGSGSDVVSMKLRAEKKGDY--YVLNGNKFWITNGPDADVLVVYAKTNWSTSKQ 211
            L   +P + S+V+ +  RA K  +   Y+L           D+ +L+ YAKTN  T  +
Sbjct: 1125 LKADDPSNYSEVIELASRAGKYEELIKYLLMARSKMHEPDVDSALLIAYAKTNQLTEME 1183


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 289 QAAIDTAFLYAHTRKQFGKNIGEFQLIQGKMADMYTTLSACRSYLYNVA 337
           QA I T +    T+KQ  K   E +  + K+A  Y  +S  ++ + NV+
Sbjct: 210 QADIPTQYPINSTQKQQAKYEAEIEGYKAKLAGTYHEISVLQNTIVNVS 258


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 145 KLCSGEHIGALAMSEPGSGSDVVSMKLRAEKKGDYYVLN 183
           K+ +G  IGAL++  PG  S+V   ++R      Y + +
Sbjct: 117 KILAGVGIGALSVLSPGYQSEVAPPQIRGAVVATYQIFS 155


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.135    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,877,035
Number of Sequences: 5004
Number of extensions: 80537
Number of successful extensions: 184
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 179
Number of HSP's gapped (non-prelim): 7
length of query: 416
length of database: 2,362,478
effective HSP length: 75
effective length of query: 341
effective length of database: 1,987,178
effective search space: 677627698
effective search space used: 677627698
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)