Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000236-TA|BGIBMGA000236-PA|IPR006092|Acyl-CoA
dehydrogenase, N-terminal, IPR006091|Acyl-CoA dehydrogenase/oxidase,
central region, IPR006090|Acyl-CoA dehydrogenase, type 1,
IPR009100|Acyl-CoA dehydrogenase/oxidase, middle and N-terminal,
IPR009075|Acyl-CoA dehydrogenase/oxidase C-terminal,
IPR006089|Acyl-CoA dehydrogenase
(416 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24934| Best HMM Match : No HMM Matches (HMM E-Value=.) 514 e-146
SB_52788| Best HMM Match : No HMM Matches (HMM E-Value=.) 228 7e-60
SB_11283| Best HMM Match : No HMM Matches (HMM E-Value=.) 189 4e-48
SB_1643| Best HMM Match : No HMM Matches (HMM E-Value=.) 184 2e-46
SB_15646| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=8.3e-27) 136 3e-32
SB_29968| Best HMM Match : No HMM Matches (HMM E-Value=.) 129 4e-30
SB_50052| Best HMM Match : No HMM Matches (HMM E-Value=.) 113 3e-25
SB_48362| Best HMM Match : Acyl-CoA_dh_1 (HMM E-Value=9.4e-08) 73 6e-13
SB_55185| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=4.5e-16) 66 7e-11
SB_7379| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 5e-10
SB_6242| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 6e-09
SB_47347| Best HMM Match : Acyl-CoA_dh_1 (HMM E-Value=1e-17) 56 7e-08
SB_10343| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=0.00044) 55 9e-08
SB_39470| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.11
SB_35341| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=2.9e-14) 35 0.11
>SB_24934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 484
Score = 514 bits (1268), Expect = e-146
Identities = 251/376 (66%), Positives = 292/376 (77%), Gaps = 14/376 (3%)
Query: 28 IDDHVFGLSEEQQQLRKMVFDFAQKELAPKAAEIDKENNFKELRPFWKKLGDLGLLGITA 87
+DDH+ GL+ EQ LR++ ++F Q ELAP A +IDKENNF +LR FWKKLGDLG GIT
Sbjct: 34 VDDHLTGLTSEQIHLREVAYNFCQNELAPYADQIDKENNFPKLREFWKKLGDLGFHGITV 93
Query: 88 SSDYGGTGGKYSDHCVIMEELSRASGGIALSYGAHSNLCVNQINRNGTEEQKSKYLPKLC 147
D GG G Y +H +++EE+SR SG IALSYGAHSNLC+NQI RNG +EQK KYLPKL
Sbjct: 94 PVDDGGIGSGYMEHIIVLEEMSRVSGSIALSYGAHSNLCINQIARNGNKEQKRKYLPKLL 153
Query: 148 SGEHIGALAMSEPGSGSDVVSMKLRAEKKGDYYVLNGNKFWITNGPDADVLVVYAKTNWS 207
SGEHIGALAMSE +GSDVVSMKLRA+K GD+YVLNG+K WITNGPDADVL+VYAKTN S
Sbjct: 154 SGEHIGALAMSEANAGSDVVSMKLRADKDGDHYVLNGHKMWITNGPDADVLIVYAKTNPS 213
Query: 208 TSKQQHGISAFLIEKDYPGFSTAQKLDKLGMRGSNTGELVFEDCKVPAANLLGQENKGVY 267
+ K +H I+ FL+EK PGFST+ KLDKLGMRGSNT ELVF++C++PA N++G+ NKGVY
Sbjct: 214 SKKPEHAITTFLVEKGMPGFSTSPKLDKLGMRGSNTCELVFDNCRIPAENVMGEVNKGVY 273
Query: 268 VLMSGLDLERLVLAAGPVGLMQAAIDTAFLYAHTRKQFGKNIGEFQLIQGKMADMYTTLS 327
VLMSGLD+ERL+LAAGPVGLMQA +D Y H R FG+ IGEFQ A + LS
Sbjct: 274 VLMSGLDIERLILAAGPVGLMQACLDVTVPYLHARTAFGQKIGEFQ----DCASIILVLS 329
Query: 328 ACRSYLYNVAKACDNGHVNSK--DCAGVILYCAEKATQVALDAIQILGGNGYINDYPTGR 385
+ A C + VN K DCA +ILY AE ATQVALDAIQ LGGNGYINDYPTGR
Sbjct: 330 S--------AFVCYSFGVNPKPRDCAAIILYTAENATQVALDAIQCLGGNGYINDYPTGR 381
Query: 386 ILRDAKLYEIGAGTSE 401
LRDAKLYEIGAGTSE
Sbjct: 382 FLRDAKLYEIGAGTSE 397
>SB_52788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 500
Score = 228 bits (557), Expect = 7e-60
Identities = 126/320 (39%), Positives = 181/320 (56%), Gaps = 2/320 (0%)
Query: 92 GGTGGKYSDHCVIMEELSRASGGIALSYGAHSNLCVNQINRNGTEEQKSKYLPKLCSGEH 151
GG G D CV+ EELS A GI + A+S L + G EEQK KYL ++
Sbjct: 175 GGIGLGVLDGCVVTEELSYACSGIQTAIEANS-LAEMPVILAGNEEQKKKYLGRMIKEPI 233
Query: 152 IGALAMSEPGSGSDVVSMKLRAEKKGDYYVLNGNKFWITNGPDADVLVVYAKTNWSTSKQ 211
+ A ++EP +GSDV +K RAEKKGD YV+NG K WITNG A+ V A+T+ S S
Sbjct: 234 MAAYCVTEPTAGSDVAGIKTRAEKKGDEYVINGQKMWITNGGVANWYFVLARTDSSASAG 293
Query: 212 QHGISAFLIEKDYPGFSTAQKLDKLGMRGSNTGELVFEDCKVPAANLLGQENKGVYVLMS 271
+ G + F+++ D PG + +K +G R S+T + FED VP N+LG E G + M
Sbjct: 294 K-GFTGFIVDADTPGVTPGRKEQNMGQRASDTRGITFEDVVVPKENVLGAEGIGFKIAMG 352
Query: 272 GLDLERLVLAAGPVGLMQAAIDTAFLYAHTRKQFGKNIGEFQLIQGKMADMYTTLSACRS 331
D R +A+ VGL + A++ A Y+ RK GK I E Q +Q +ADM + R
Sbjct: 353 AFDKTRPPVASSAVGLARRALEEATKYSMERKTMGKYICEHQAVQFLLADMAIGVETARL 412
Query: 332 YLYNVAKACDNGHVNSKDCAGVILYCAEKATQVALDAIQILGGNGYINDYPTGRILRDAK 391
A D G N+ + + A + A DA+QI GGNG+ +YP +++RDAK
Sbjct: 413 ATQRSAWEIDQGRRNTYYASIAKCLAGDVANKCATDAVQIFGGNGFNQEYPVEKLMRDAK 472
Query: 392 LYEIGAGTSEVRRMLIGRAL 411
+++I GT++++RM+IGR+L
Sbjct: 473 IFQIYEGTAQIQRMIIGRSL 492
Score = 33.5 bits (73), Expect = 0.32
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 33 FGLSEEQQQLRKMVFDFAQKELAPKAAEIDK 63
F +S+E + L+ M FA++E+ PKAAE DK
Sbjct: 36 FAMSDELRALQDMARKFAREEIMPKAAEHDK 66
>SB_11283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 631
Score = 189 bits (460), Expect = 4e-48
Identities = 120/380 (31%), Positives = 190/380 (50%), Gaps = 14/380 (3%)
Query: 36 SEEQQQLRKMVFDFAQKELAPKAAEIDKENNFKELRPFWKKLGDLGLLGITASSDYGGTG 95
+++ QLR+ + F +KE+ P E +K F F KK G G G+ YGG G
Sbjct: 259 TDDHVQLRENLNKFIEKEINPFVDEWEKAKMFPAHELF-KKFGKAGYFGVNKPVKYGGMG 317
Query: 96 GKYSDHCVIMEEL-SRASGGIALSYGAHSNLCVNQINRNGTEEQKSKYLPKLCSGEHIGA 154
YS + EEL S GG+ ++ G +++ + R G+EE K ++L +G+ +
Sbjct: 318 LDYSFSVAMAEELGSIKCGGVPMAIGVQADMATPALVRFGSEELKQQFLVPTIAGDFVTC 377
Query: 155 LAMSEPGSGSDVVSMKLRAEKKGDYYVLNGNKFWITNGPDADVLVVYAKTNWSTSKQQHG 214
L +SE G+GSDV S+K A K GD YV+NG K W TNG AD + + A T+
Sbjct: 378 LGVSETGAGSDVASIKTTAVKDGDDYVINGGKMWTTNGIQADWMCLLANTD--KGHPHFN 435
Query: 215 ISAFLIEKDYPGFSTAQKLDKLGMRGSNTGELVFEDCKVPAANLLGQENKG-VYVLMSGL 273
+ + + PG A+ +DKLGM S+T E FE+ +VP + +G+E G VY ++ +
Sbjct: 436 KTLICLPLNLPGIQRARNIDKLGMHCSDTAEFYFENVRVPQSYRIGEEGMGFVYQMLQFV 495
Query: 274 DLERLVLAAGPVGLMQAAIDTAFLYAHTRKQFGKNIGEFQLIQGKMADMYTTLSACRSYL 333
+ ER+ A + ++ I Y R FGK+I + Q + ++A++ T + RS +
Sbjct: 496 E-ERVFAGASVLVSLERLIKETAEYCKGRTAFGKSILDNQYVHYRLAELQTEVELLRSLV 554
Query: 334 YNVAKACDNGHVNSKD---CAGVILYCAEKATQVALDA-IQILGGNGYINDYPTGRILRD 389
Y H+ KD A ++ A + + D+ +Q GG G+ +D R RD
Sbjct: 555 YRTTDL----HIKKKDSNLLASMLKLKAGRLVREVTDSCLQFWGGMGFTSDVEVSRAYRD 610
Query: 390 AKLYEIGAGTSEVRRMLIGR 409
+L IG G EV +I +
Sbjct: 611 NRLLSIGGGADEVMLSIIAK 630
>SB_1643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 184 bits (447), Expect = 2e-46
Identities = 116/331 (35%), Positives = 166/331 (50%), Gaps = 44/331 (13%)
Query: 13 KTANKTGHRCISHYPIDDHVFGLSEEQQQLRKMVFDFAQKELAPKAAEIDKENNFKELRP 72
+T ++G + + + L E + LRK DFA EL P A + DKE+ + + +
Sbjct: 19 RTTKRSGLNIVRNGRAISSLAKLPETHEMLRKTCRDFADNELTPVAGKFDKEHRYPQEKV 78
Query: 73 FWKKLGDLGLLGITASSDYGGTGGKYSDHCVIMEELSRASGGIALSYGAHSNLCVNQINR 132
K LG+LGLLG+ GGTG + + MEE+SR + C+ +N
Sbjct: 79 --KMLGELGLLGVEVPESLGGTGLDAFAYAIAMEEISRGCASLG---------CIMSVNN 127
Query: 133 NGTEEQKSKYLPKLCSGEHIGALAMSEPGSGSDVVSMKLRAEKKGDYYVLNGNKFWITNG 192
GT+ QK +++ +G+ +G A+SEP +GSD + K A GD+YVLNG K WITNG
Sbjct: 128 YGTDAQKEEWIKPFLNGDRVGCFALSEPDNGSDAGAAKTTAVLDGDHYVLNGTKAWITNG 187
Query: 193 PDADVLVVYAKTNWSTSKQQHGISAFLIEKDYPGFSTAQKLDKLGMRGSNTGELVFEDCK 252
+++ V GISAFL+ K PG + K DKLG+R ++T LVFEDC+
Sbjct: 188 YESEAAV--------------GISAFLVPKPTPGLTLGNKEDKLGIRATSTCYLVFEDCR 233
Query: 253 VPAANLLGQENKGVYVLMSGLDLERLVLAAGPVGLMQAAIDTAFLYAHTRKQFGKNIGEF 312
+P NLLG+ G + M+ LD A+D YA R F + I +
Sbjct: 234 IPKENLLGEPGYGFKIAMAALD---------------CAVD----YADKRMAFNQKISKL 274
Query: 313 QLIQGKMADMYTTLSACRSYLYNVAKACDNG 343
Q IQ K+AD+ T L A R + A D G
Sbjct: 275 QTIQMKLADIATQLEAARLLTWKAAAIKDAG 305
>SB_15646| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=8.3e-27)
Length = 257
Score = 136 bits (329), Expect = 3e-32
Identities = 75/227 (33%), Positives = 116/227 (51%), Gaps = 2/227 (0%)
Query: 152 IGALAMSEPGSGSDVVSMKLRAEKKGDYYVLNGNKFWITNGPDADVLVVYAKTNWSTSKQ 211
+G + +SE G+GSDV +K A+K GD YV+NG+K WITN P AD + + A T S K
Sbjct: 2 VGCIGVSEVGAGSDVAGLKTTAKKDGDDYVINGSKMWITNSPSADFICLLANT--SDDKP 59
Query: 212 QHGISAFLIEKDYPGFSTAQKLDKLGMRGSNTGELVFEDCKVPAANLLGQENKGVYVLMS 271
S ++ + PG + + LDKLGMR S T ++ F++ +VP N +G E G + M
Sbjct: 60 HVNKSLIMVPMNTPGITLSTHLDKLGMRSSETAQVFFDNVRVPQRNRIGHEGAGFMMQML 119
Query: 272 GLDLERLVLAAGPVGLMQAAIDTAFLYAHTRKQFGKNIGEFQLIQGKMADMYTTLSACRS 331
ERL AA + ++ I+ Y RK FG + + Q+I +MA++ T + R+
Sbjct: 120 QFQEERLFGAANMIKGLEHCINATIDYCKERKTFGNALIDNQVIHFRMAELQTEVECLRA 179
Query: 332 YLYNVAKACDNGHVNSKDCAGVILYCAEKATQVALDAIQILGGNGYI 378
+Y + G + + L +V +Q GG GY+
Sbjct: 180 LVYQATEQYVRGRDVTNLASMAKLKAGRLGREVTDSCLQYWGGMGYM 226
>SB_29968| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 129 bits (312), Expect = 4e-30
Identities = 98/374 (26%), Positives = 173/374 (46%), Gaps = 21/374 (5%)
Query: 35 LSEEQQQLRKMVFDFAQKELAPKAAEIDKENNFKELRPFWKKLGDLGLLGITASSDYGGT 94
LSEE++ +++ V FA++++ P +E+D+ + K L + GL+GI S+YGGT
Sbjct: 42 LSEEEEMMKQSVARFAKEKIQPLVSEMDQNSQMDP--GIIKGLFEQGLMGIEIGSEYGGT 99
Query: 95 GGKYSDHCVIMEELSRASGGIALSYGAHSNLCVNQINRNGTEEQKSKYLPKLCSGEHIGA 154
+ +++EEL++ +++ + L N I GT+EQK +YLP+L +G
Sbjct: 100 DSTFFAANLVIEELAKVDPSVSVMCDVQNTLINNLIMTYGTKEQKQEYLPQLAQ-HMVGG 158
Query: 155 LAMSEPGSGSDVVSMKLRAEKKGDYYVLNGNKFWITNGPDADVLVVYAKTNWSTSKQQHG 214
+SE SGSD ++K A +K ++VLNG+K WITN A V +V A N + + +
Sbjct: 159 FCLSEESSGSDAFALKTVALEKDGHFVLNGSKMWITNAEYAGVFLVMANVN-PSERPCND 217
Query: 215 ISAFLIEKD------------YPGFSTAQKLDKLGMRGSNTGELVFEDCKVPAAN---LL 259
I + +K +P + + + G TG VP +
Sbjct: 218 IGQYEGDKSNPSPEKKTTLDPFPTKTASSSISNKGHTAEKTGYKGITTFIVPRETPGLSI 277
Query: 260 GQENKGVYVLMSGLDLERLVLAAGPVGLMQAAIDTAFLYAHTRKQFGK-NIGEFQLIQGK 318
G++ + + S P + + + YA G+ IG Q +Q +
Sbjct: 278 GKKEDKLGIRASSTCPVHFDNVKVPSSSVLGEVGHGYKYAIGMLNEGRIGIGA-QAMQHQ 336
Query: 319 MADMYTTLSACRSYLYNVAKACDNGHVNSKDCAGVILYCAEKATQVALDAIQILGGNGYI 378
+A++ T + A R +YN A+ + G ++ A + +E AT ++ +GG G+
Sbjct: 337 IAEVRTKIEAARLLVYNAARRKEAGLPVVREGAMAKYFASEVATLTTSKCMEWMGGVGFT 396
Query: 379 NDYPTGRILRDAKL 392
YP + RD K+
Sbjct: 397 KSYPIEKYYRDCKI 410
>SB_50052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 538
Score = 113 bits (272), Expect = 3e-25
Identities = 64/201 (31%), Positives = 109/201 (54%), Gaps = 1/201 (0%)
Query: 208 TSKQQHGISAFLIEKDYPGFSTAQKLDKLGMRGSNTGELVFEDCKVPAANLLGQENKGVY 267
T + + ++AF++E+ + G + K+G++ SNT E+ F++ VP N+LG E G
Sbjct: 151 TGEVKDKVTAFIVERGFGGVESGPPEKKMGIKASNTAEVYFDNVPVPVENVLGGEGNGFK 210
Query: 268 VLMSGLDLERLVLAAGPVGLMQAAIDTAFLYAHTRKQFGKNIGEFQLIQGKMADMYTTLS 327
V M+ L+ R +A G M+ I+ A +A R QFG I F IQ K+A M
Sbjct: 211 VAMNILNNGRFGMAGALSGTMKGLIEKAVDFAANRTQFGAKIETFGAIQEKIARMAMLHY 270
Query: 328 ACRSYLYNVAKACDNGHVNSKDCAGVI-LYCAEKATQVALDAIQILGGNGYINDYPTGRI 386
S Y ++ D+G + + A + ++ +E A VA + IQILGG G++ R+
Sbjct: 271 VTESMAYMISANMDSGATDFQVEAAISKVFASEAAWFVADECIQILGGTGFMKSAGVERV 330
Query: 387 LRDAKLYEIGAGTSEVRRMLI 407
+RD +++ I GT+++ R++I
Sbjct: 331 MRDLRIFRIFEGTNDILRLMI 351
Score = 35.5 bits (78), Expect = 0.080
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Query: 75 KKLGDLGLLGITASSDYGGTGGKYSDHCVIMEELSRASGGIALSYGAHSNLCVNQINRNG 134
+ L ++G G+ +D GG G + + ++E + + + GAH ++ I G
Sbjct: 60 ESLKEMGAFGLQVPADLGGVGLTNTQYARMVEIVGAHDLAVGIVLGAHQSIGFKGILLFG 119
Query: 135 TEEQKSKYLPKLCSGEHIGALAMSEPGSGSDVVSMKLRAEKKGD 178
K+ +G+ A ++EP SGSD + ++ K G+
Sbjct: 120 N---------KVATGKKYAAFCLTEPSSGSDAAT-PIKDPKTGE 153
>SB_48362| Best HMM Match : Acyl-CoA_dh_1 (HMM E-Value=9.4e-08)
Length = 100
Score = 72.5 bits (170), Expect = 6e-13
Identities = 35/97 (36%), Positives = 58/97 (59%), Gaps = 2/97 (2%)
Query: 322 MYTTLSACRSYLYNVAKACDNGHVNSKDCAGVILYCAEKATQVALDAIQILGGNGYINDY 381
M + + C+ + Y+VAK ++G K+ + L + A V DA+Q+LGG GY+ +Y
Sbjct: 1 MSSEVEMCKEFNYSVAKRLNDGQYVVKEASMSKLLSTKMADSVIYDALQLLGGYGYMEEY 60
Query: 382 PTGRILRDAKLYEIGAGTSEVRRMLIGRAL--NNEYK 416
P R+LRD++L IG GTSE+ + +I + + +YK
Sbjct: 61 PLARLLRDSRLGPIGGGTSEILKEIIAKMIIDKKDYK 97
>SB_55185| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=4.5e-16)
Length = 647
Score = 65.7 bits (153), Expect = 7e-11
Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 12/159 (7%)
Query: 113 GGIALSYGAHSNLCVNQINRNGTEEQKSKYLPKLCSGEHIGALAMSEPGSGSDVVSMKLR 172
G +A NL + + GTE SK L + S E +G ++E G G++ V M+
Sbjct: 131 GSMATKMTVQFNLFGGTVLKLGTERHHSKLLKGIDSLEDVGCFGLTELGYGNNAVQMETT 190
Query: 173 A--EKKGDYYVLN-----GNKFWITNGP-DADVLVVYAKTNWSTSKQQ-HGISAFLIEK- 222
A + + +++N K+WITNG DA +VV+A+ + + HG+ + +K
Sbjct: 191 ATYDNETQEFIVNTPSTLAQKYWITNGACDAHHIVVFAQLYVNGKNEGIHGVLVPIRDKN 250
Query: 223 --DYPGFSTAQKLDKLGMRGSNTGELVFEDCKVPAANLL 259
+ PG S K+G+ G + + +F++ +VP NLL
Sbjct: 251 LKEMPGSSIHDMGPKMGLNGVDNAKFIFDNVRVPRENLL 289
>SB_7379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 413
Score = 62.9 bits (146), Expect = 5e-10
Identities = 72/290 (24%), Positives = 117/290 (40%), Gaps = 27/290 (9%)
Query: 134 GTEEQKSKYLPKLCSGEHIGALAMSEPG-SGSDVVSMKLRAEKKGDYYVLNGNKFWITNG 192
G+ EQK K+L L +GE A M+EPG + SD +M+ + + GD+YV+NG K+W +
Sbjct: 138 GSPEQKKKWLDPLLNGEMRSAFCMTEPGVASSDATNMECKITRHGDHYVINGRKWWSSGA 197
Query: 193 --PDADVLVVYAKTNWSTSKQQHGISAFLIEKDYPGFSTAQKLDKLGMRGSNTGELVFED 250
P +L+V + G+ KD P S A ++ G E+ F+
Sbjct: 198 GDPRCKILIVMGTS---------GV------KDAP--SHASRVISDAPHGH--FEMAFDH 238
Query: 251 CKVPAAN-LLGQENKGV-YVLMSGLDLERLVLAAGPVGLMQAAI-DTAFLYAHTRKQFGK 307
+VPA N +LG + + +L +D ++Q I ++ + R K
Sbjct: 239 VRVPACNMILGLAQRSLELMLQRAVDRVAFGTRLAEKSIVQQQIAESRMEIEYARLMVLK 298
Query: 308 NIGEFQLIQGKMADMYTTLSACRSYLYNVAKACDNGHVNSKDC--AGVILYCAEKATQVA 365
K A T R + + +N+ +C +++ E A +V
Sbjct: 299 AAYLLDKQGNKAARKQTDSFYQRIVITDKETGTKPLSLNTLNCFYERIVITDKETACRVI 358
Query: 366 LDAIQILGGNGYINDYPTGRILRDAKLYEIGAGTSEVRRMLIGRALNNEY 415
AIQ+ GG G D P + I G EV + + EY
Sbjct: 359 DRAIQVHGGMGVCQDSPLAHFYASMRTLRIADGPDEVHMETVAKMELREY 408
>SB_6242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 686
Score = 59.3 bits (137), Expect = 6e-09
Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 12/148 (8%)
Query: 124 NLCVNQINRNGTEEQKSKYLPKLCSGEHIGALAMSEPGSGSDVVSMKLRA--EKKGDYYV 181
NL + + GTE SK L + S + +G ++E G G++ V M+ A +K+ +V
Sbjct: 163 NLFGGTVLKLGTERHHSKLLKGIDSLQEVGCFGLTELGYGNNAVQMETTAVYDKETKEFV 222
Query: 182 LN-----GNKFWITNGP-DADVLVVYAKTNWSTSKQQ-HGISAFLIEKDY---PGFSTAQ 231
+N K+WITNG A +VV+A+T Q HG+ + + D PG
Sbjct: 223 VNTPSPLAQKYWITNGACHAHHIVVFAQTYVDGVNQGIHGVLVPIRDHDLHVKPGVRIDD 282
Query: 232 KLDKLGMRGSNTGELVFEDCKVPAANLL 259
K+G+ G + + F++ VP NLL
Sbjct: 283 MGHKMGLNGVDNAKFYFDNVHVPRENLL 310
>SB_47347| Best HMM Match : Acyl-CoA_dh_1 (HMM E-Value=1e-17)
Length = 551
Score = 55.6 bits (128), Expect = 7e-08
Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 14/150 (9%)
Query: 132 RNGTEEQKSKYLPKLCSGEHIGALAMSEPG-SGSDVVSMKLRAEKKGDYYVLNGNKFWIT 190
R G++ QK K+L L G AM+EP + SD +++ GD+YVLNG K+WI+
Sbjct: 320 RYGSDAQKEKWLEPLLDGRIRSCFAMTEPQVASSDAANIESSIRVDGDHYVLNGRKWWIS 379
Query: 191 NGPDADVLVVYAKTNWSTSKQQHGISAFLIEKDYPGFSTAQKLDKLGMRGSNTG--ELVF 248
+ ++ W+ + S L+ D G + L G + G EL F
Sbjct: 380 G------VYLFLALQWAVIQ-----SMVLVPMDSEGVRIVRPLSVFGYDDAPAGHAELEF 428
Query: 249 EDCKVPAANLLGQENKGVYVLMSGLDLERL 278
+ +VP N++ +G + L R+
Sbjct: 429 VNVRVPKENIILGPGRGFEIAQGRLGPGRI 458
>SB_10343| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=0.00044)
Length = 156
Score = 55.2 bits (127), Expect = 9e-08
Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 134 GTEEQKSKYLPKLCSGEHIGALAMSEPG-SGSDVVSMKLRAEKKGDYYVLNGNKFW 188
G+ EQK K+L L +G+ A M+EPG + SD +M+ + + GD+YV+NG K+W
Sbjct: 98 GSPEQKKKWLDPLLNGDIRSAFCMTEPGVASSDATNMECKITRHGDHYVINGRKWW 153
>SB_39470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 35.1 bits (77), Expect = 0.11
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 355 LYCAEKATQVALDAIQILGGNGYINDYPTGRILRDAKL 392
LY A++A VA + ++ GG GYI D +LRDA++
Sbjct: 86 LYTAKQAIYVASEGLESFGGQGYIEDTGLPGLLRDAQV 123
>SB_35341| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=2.9e-14)
Length = 490
Score = 35.1 bits (77), Expect = 0.11
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 10/115 (8%)
Query: 115 IALSYGAHSNLCVNQINRNGTEEQKSKYLPKLCSGEHIGALAMSEPGSGSDVVSMKLRA- 173
+ L H + + I GT+EQ+ K+LP + +G A +E G G+ V ++ A
Sbjct: 131 LTLPSDLHRVMFMPTIKLMGTKEQQEKWLPLAEMHQILGTFAQTELGHGTFVRGLETTAT 190
Query: 174 -EKKGDYYVLN-----GNKFWITN-GPDADVLVVYAKTNWSTSKQQHGISAFLIE 221
+K+ +VL+ +K+W N G + +V A+ +++G+ FL++
Sbjct: 191 YDKQTQQFVLHSPSLTASKWWPGNLGHSTNYCIVVARL--IIDDKEYGLHYFLLQ 243
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.135 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,788,427
Number of Sequences: 59808
Number of extensions: 576999
Number of successful extensions: 1107
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1069
Number of HSP's gapped (non-prelim): 22
length of query: 416
length of database: 16,821,457
effective HSP length: 84
effective length of query: 332
effective length of database: 11,797,585
effective search space: 3916798220
effective search space used: 3916798220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
- SilkBase 1999-2023 -