GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000236-TA|BGIBMGA000236-PA|IPR006092|Acyl-CoA
dehydrogenase, N-terminal, IPR006091|Acyl-CoA dehydrogenase/oxidase,
central region, IPR006090|Acyl-CoA dehydrogenase, type 1,
IPR009100|Acyl-CoA dehydrogenase/oxidase, middle and N-terminal,
IPR009075|Acyl-CoA dehydrogenase/oxidase C-terminal,
IPR006089|Acyl-CoA dehydrogenase
         (416 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.        24   6.7  
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    24   8.8  
DQ974170-1|ABJ52810.1|  511|Anopheles gambiae serpin 12 protein.       24   8.8  
AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.         24   8.8  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    24   8.8  
AF080546-1|AAC29475.1|  432|Anopheles gambiae S-adenosyl-L-homoc...    24   8.8  

>AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.
          Length = 615

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 138 QKSKYLPKLCSGEHIGALAMSEPGSGSD 165
           QK+  LPK  + + + AL   EP  GSD
Sbjct: 572 QKALVLPKRNAPKALEALVKDEPKEGSD 599


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
            gambiae RT2 retroposon. ).
          Length = 1222

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 11/18 (61%), Positives = 12/18 (66%)

Query: 276  ERLVLAAGPVGLMQAAID 293
            ER  LAAGP G+   AID
Sbjct: 1179 ERADLAAGPSGMRNRAID 1196


>DQ974170-1|ABJ52810.1|  511|Anopheles gambiae serpin 12 protein.
          Length = 511

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 190 TNGPDADVLVVYAKTNWSTSK 210
           +NGPD D LV+   +N S SK
Sbjct: 107 SNGPDGDNLVLEQGSNNSNSK 127


>AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.
          Length = 437

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 179 YYVLNGNKFWITNGPDADVLVVYAKTNWSTSKQQHGISAFLIEKDYPGF 227
           Y  LN NK+   N   +  L VYA T  +   +   IS+  +  DY G+
Sbjct: 182 YRKLNLNKYTTYN--TSLTLTVYALTELNGESEMTEISSMQLTGDYEGW 228


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 34   GLSEEQQQLRKMVFDFAQKELAPKAAEIDKE 64
            G +++QQQ+ +  F F   +  P   E+  E
Sbjct: 1282 GSTQQQQQMERQQFGFGNNDNLPGVEEVAAE 1312


>AF080546-1|AAC29475.1|  432|Anopheles gambiae
           S-adenosyl-L-homocysteine hydrolase protein.
          Length = 432

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 200 VYAKTNWSTSKQQHGISAFLIEKDYPGFSTAQKLDKLGMR 239
           V A+    T+++Q+ I   ++ K       A  LDKLG++
Sbjct: 366 VLAQIELWTNREQYAIGVHVLPKKLDDEVAALHLDKLGVK 405


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.135    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 438,059
Number of Sequences: 2123
Number of extensions: 18377
Number of successful extensions: 26
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 7
length of query: 416
length of database: 516,269
effective HSP length: 66
effective length of query: 350
effective length of database: 376,151
effective search space: 131652850
effective search space used: 131652850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)