GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000236-TA|BGIBMGA000236-PA|IPR006092|Acyl-CoA
dehydrogenase, N-terminal, IPR006091|Acyl-CoA dehydrogenase/oxidase,
central region, IPR006090|Acyl-CoA dehydrogenase, type 1,
IPR009100|Acyl-CoA dehydrogenase/oxidase, middle and N-terminal,
IPR009075|Acyl-CoA dehydrogenase/oxidase C-terminal,
IPR006089|Acyl-CoA dehydrogenase
         (416 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        24   2.8  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    24   2.8  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   4.8  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    23   4.8  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   4.8  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 12/65 (18%), Positives = 28/65 (43%)

Query: 203 KTNWSTSKQQHGISAFLIEKDYPGFSTAQKLDKLGMRGSNTGELVFEDCKVPAANLLGQE 262
           + NW++ +    +S  ++ +++P +   +   +   R    G+L  E+    A  +    
Sbjct: 152 RQNWASLQPYKKLSVEVVRREHPFWDDQRVEQEAKRRFEKYGQLFMEETLKAAKRMRPAA 211

Query: 263 NKGVY 267
           N G Y
Sbjct: 212 NWGYY 216


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)

Query: 74  WKKLGDLGLLGIT 86
           WKK+ D+ LLG+T
Sbjct: 108 WKKIFDINLLGLT 120


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 12/45 (26%), Positives = 21/45 (46%)

Query: 237 GMRGSNTGELVFEDCKVPAANLLGQENKGVYVLMSGLDLERLVLA 281
           GMRG  + E + ++ K          +K VY++    D  + VL+
Sbjct: 116 GMRGKKSLEEILDEIKKKTTRFQDSRSKDVYLIDYPEDYGKRVLS 160


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 12/45 (26%), Positives = 21/45 (46%)

Query: 237 GMRGSNTGELVFEDCKVPAANLLGQENKGVYVLMSGLDLERLVLA 281
           GMRG  + E + ++ K          +K VY++    D  + VL+
Sbjct: 116 GMRGKKSLEEILDEIKKKTTRFQDSRSKDVYLIDYPEDYGKRVLS 160


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 12/45 (26%), Positives = 21/45 (46%)

Query: 237 GMRGSNTGELVFEDCKVPAANLLGQENKGVYVLMSGLDLERLVLA 281
           GMRG  + E + ++ K          +K VY++    D  + VL+
Sbjct: 116 GMRGKKSLEEILDEIKKKTTRFQDSRSKDVYLIDYPEDYGKRVLS 160


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.135    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,758
Number of Sequences: 429
Number of extensions: 4993
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 5
length of query: 416
length of database: 140,377
effective HSP length: 59
effective length of query: 357
effective length of database: 115,066
effective search space: 41078562
effective search space used: 41078562
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)