GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000235-TA|BGIBMGA000235-PA|IPR002650|ATP-sulfurylase
         (261 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   1.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   1.3  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   3.1  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   5.4  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    21   7.1  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    21   9.4  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 27  DSYRLTPNELRQKFKDLGADAVFAF 51
           ++Y    N+L   +K LG D+V++F
Sbjct: 349 NTYNEQGNKLADLYKSLGPDSVYSF 373


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 27  DSYRLTPNELRQKFKDLGADAVFAF 51
           ++Y    N+L   +K LG D+V++F
Sbjct: 241 NTYNEQGNKLADLYKSLGPDSVYSF 265


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query: 154 GRDPAGLPYPR 164
           G+ P G+PYPR
Sbjct: 72  GQPPQGMPYPR 82


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 201 SVGKMAFFDPTRKEDFDF---ISGTRMRGLAKAGKEPPRGFMAPTAWNVLAE 249
           +V K  +  PT  + +     +SG  +   A+ G      FM P   N+L++
Sbjct: 172 NVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQTGSGKTAAFMLPIIHNLLSD 223


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 19  RIRWNDGLDSYRLTPNELRQKFKDLG 44
           R +WN+G +S  ++      +FK LG
Sbjct: 196 RYKWNEGPNSVGVSSEVSLPQFKVLG 221


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor
          subunit protein.
          Length = 141

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 19 RIRWNDGLDSYRLTPNELRQKFKDLG 44
          R +WN+G +S  ++      +FK LG
Sbjct: 14 RYKWNEGPNSVGVSNEVSLPQFKVLG 39


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.139    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,279
Number of Sequences: 317
Number of extensions: 2858
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 261
length of database: 114,650
effective HSP length: 56
effective length of query: 205
effective length of database: 96,898
effective search space: 19864090
effective search space used: 19864090
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)