GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000235-TA|BGIBMGA000235-PA|IPR002650|ATP-sulfurylase
         (261 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz...   116   5e-27
SPAC5H10.08c |pan6||pantoate-beta-alanine ligase |Schizosaccharo...    26   4.8  
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    25   8.4  

>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score =  116 bits (278), Expect = 5e-27
 Identities = 85/252 (33%), Positives = 126/252 (50%), Gaps = 18/252 (7%)

Query: 5   SGDWLVGGTLEVFERIRWNDGLDSYRLTPNELRQKFKDLGADAVFAFQLRNPIHNGHALL 64
           +G+  VGG L+    IR  D ++ YR +P +LR  F+    + V AFQ RNP+H  H  L
Sbjct: 147 AGNVYVGGKLQAVTPIRHFDFVE-YRYSPAQLRSDFQRNNWNRVVAFQTRNPMHRAHREL 205

Query: 65  MQDTQRQLVERGFKKPVLLLHPLGGWTKDDDVPLEVRIKQHKAVLKEGVLDPNSTVLAIF 124
              T R   + G +   +L+HP+ G TK  D+    R++ ++A+L+       S  L++ 
Sbjct: 206 ---TVRAAKQHGAR---VLIHPVVGMTKPGDIDHFTRVRVYEAILQR--YPKGSAKLSLL 257

Query: 125 PSPMMYAGPTEVQWHAKCRMNAGANHYIVGRDPAGLPYPRGDG-DLYDPRHGAMLLKVAP 183
           P  M  AGP E  WHA  R N GA+H+I+GRD AG P     G D Y P     L++   
Sbjct: 258 PLAMRMAGPREALWHAIIRKNYGASHFIIGRDHAG-PGKNSQGEDFYGPYDAQYLVEQYA 316

Query: 184 GLNDLEIIPFRVAAY--DTSVGK-MAFFDP-TRKEDFDFISGTRMRGLAKAGKEPPRGFM 239
               + I+PF++  Y  D  + K +   +P TR  +   ISGT +R   + G   P  F 
Sbjct: 317 QEIGITIVPFQMMTYLPDEDIYKPVDKVEPGTRTLN---ISGTELRRRLRVGANIPEWFS 373

Query: 240 APTAWNVLAEYY 251
            P    +L + Y
Sbjct: 374 YPEVVAILRQSY 385


>SPAC5H10.08c |pan6||pantoate-beta-alanine ligase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 283

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 79  KPVLLLHP-LGGWTKDDD----VPLEVRIKQ-HKAVLKEGVLDPNSTVLAIFPSPMMYAG 132
           K  LL+H  +  W KD +    VP    + + H ++++E        V++IF +PM +  
Sbjct: 5   KEKLLIHQQVDNWRKDGNRIAFVPTMGNLHEGHFSLVREAKRHAEKVVVSIFVNPMQFNN 64

Query: 133 PTEV 136
           P ++
Sbjct: 65  PQDL 68


>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 81  VLLLHPLGGWTKDDDVPLEVRIKQHKAVLKEGVL 114
           VL +H LG  +K DD+P    + +H +V  + V+
Sbjct: 475 VLDVHALGALSKMDDIPETDDVFKHNSVSLKSVI 508


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.139    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,293,940
Number of Sequences: 5004
Number of extensions: 55111
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 93
Number of HSP's gapped (non-prelim): 3
length of query: 261
length of database: 2,362,478
effective HSP length: 71
effective length of query: 190
effective length of database: 2,007,194
effective search space: 381366860
effective search space used: 381366860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)