Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000235-TA|BGIBMGA000235-PA|IPR002650|ATP-sulfurylase
(261 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0065 - 636957-637082,637165-637251,637365-637625,637695-63... 378 e-105
03_05_1092 - 30331323-30331463,30331562-30331648,30331825-303320... 374 e-104
09_04_0697 + 19566182-19566851,19567565-19567598,19567677-195677... 31 1.2
01_06_0014 + 25583997-25584372,25584411-25584445 29 2.9
09_06_0046 + 20467240-20467586,20467627-20468116,20468815-20469426 28 6.6
02_04_0066 + 19408431-19408865,19410540-19410620 28 8.7
02_01_0181 + 1237167-1237820,1238053-1238142,1238689-1238841,123... 28 8.7
01_06_0790 + 32019972-32020101,32020461-32020657,32020790-320209... 28 8.7
>04_01_0065 -
636957-637082,637165-637251,637365-637625,637695-638100,
640036-640223
Length = 355
Score = 378 bits (931), Expect = e-105
Identities = 167/256 (65%), Positives = 207/256 (80%)
Query: 2 IKDSGDWLVGGTLEVFERIRWNDGLDSYRLTPNELRQKFKDLGADAVFAFQLRNPIHNGH 61
I +G+WL+GG LEV E I++NDGLD YRL+P +LR +F GADAVFAFQLRNP+HNGH
Sbjct: 93 IAQAGNWLIGGDLEVIEPIKYNDGLDHYRLSPQQLRNEFDKRGADAVFAFQLRNPVHNGH 152
Query: 62 ALLMQDTQRQLVERGFKKPVLLLHPLGGWTKDDDVPLEVRIKQHKAVLKEGVLDPNSTVL 121
ALLM DT+R+L+E GFK P+LLLHPLGG+TK DDVPL VR++QH VL++GVLDP +T++
Sbjct: 153 ALLMNDTRRRLLEMGFKNPILLLHPLGGFTKADDVPLPVRMEQHSKVLEDGVLDPETTIV 212
Query: 122 AIFPSPMMYAGPTEVQWHAKCRMNAGANHYIVGRDPAGLPYPRGDGDLYDPRHGAMLLKV 181
+IFPSPM YAGPTEVQWHAK R+NAGAN YIVGRDPAG+ +P DLY+P HG +L +
Sbjct: 213 SIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYNPDHGKKVLSM 272
Query: 182 APGLNDLEIIPFRVAAYDTSVGKMAFFDPTRKEDFDFISGTRMRGLAKAGKEPPRGFMAP 241
APGL L I+PF+VAAYDT KMAFFDP+R +DF FISGT+MR AK+G+ PP GFM P
Sbjct: 273 APGLEKLNILPFKVAAYDTVAKKMAFFDPSRSKDFLFISGTKMRAFAKSGENPPDGFMCP 332
Query: 242 TAWNVLAEYYQSMKSK 257
W VL +YY S++++
Sbjct: 333 GGWKVLVDYYNSLQTE 348
>03_05_1092 -
30331323-30331463,30331562-30331648,30331825-30332085,
30332231-30332636,30333702-30334240
Length = 477
Score = 374 bits (921), Expect = e-104
Identities = 171/260 (65%), Positives = 206/260 (79%)
Query: 2 IKDSGDWLVGGTLEVFERIRWNDGLDSYRLTPNELRQKFKDLGADAVFAFQLRNPIHNGH 61
I ++GDWL+GG LEV E I++NDGLD YRL+P +LR++F ADAVFAFQLRNP+HNGH
Sbjct: 210 ITNAGDWLIGGDLEVIEPIKYNDGLDQYRLSPAQLREEFARRNADAVFAFQLRNPVHNGH 269
Query: 62 ALLMQDTQRQLVERGFKKPVLLLHPLGGWTKDDDVPLEVRIKQHKAVLKEGVLDPNSTVL 121
ALLM DT+++L+E G+K PVLLLHPLGG+TK DDVPL R+KQH+ VL+EGVL+P STV+
Sbjct: 270 ALLMTDTRKRLLEMGYKNPVLLLHPLGGFTKADDVPLSWRMKQHEKVLEEGVLNPESTVV 329
Query: 122 AIFPSPMMYAGPTEVQWHAKCRMNAGANHYIVGRDPAGLPYPRGDGDLYDPRHGAMLLKV 181
AIFPSPM YAGPTEVQWHAK R+NAGAN YIVGRDPAG+ +P DLYD HG +L +
Sbjct: 330 AIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDADHGKKVLSM 389
Query: 182 APGLNDLEIIPFRVAAYDTSVGKMAFFDPTRKEDFDFISGTRMRGLAKAGKEPPRGFMAP 241
APGL L I+PF+VAAYDT KM FFDP+RK+DF FISGT+MR LAK + PP GFM P
Sbjct: 390 APGLEKLNILPFKVAAYDTKQKKMDFFDPSRKDDFLFISGTKMRTLAKNCQSPPDGFMCP 449
Query: 242 TAWNVLAEYYQSMKSKMDTN 261
W VL EYY S+ D++
Sbjct: 450 GGWKVLVEYYDSLTPSADSS 469
>09_04_0697 +
19566182-19566851,19567565-19567598,19567677-19567725,
19567891-19567949,19568063-19568079,19568178-19568329,
19568459-19568548,19568793-19568886,19568976-19569127,
19569630-19569727,19570049-19570184,19570695-19570793,
19570898-19571029
Length = 593
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 146 AGANHYIVGRDPAGLPYPRGDGDLYD 171
A A+ ++ G P LP PRG GD YD
Sbjct: 95 APASTFLAGAIPYPLPLPRGGGDTYD 120
>01_06_0014 + 25583997-25584372,25584411-25584445
Length = 136
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 8/36 (22%)
Query: 115 DPNSTVLAIFPSPMMYAGPTEVQW-HAKCRMNAGAN 149
DPN T +A+ P PT +W H KCRM GAN
Sbjct: 46 DPNLTCIAVAP-------PTAWRWRHMKCRMVHGAN 74
>09_06_0046 + 20467240-20467586,20467627-20468116,20468815-20469426
Length = 482
Score = 28.3 bits (60), Expect = 6.6
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 106 KAVLKEGV-LDPNSTVLAIFPSPMMYAGPTEVQ-WHAKCRMNAGANHYIVGRDPAGLPYP 163
KAV+KE + L P + +L S M PT +Q +H + A N + +GRDPA P
Sbjct: 336 KAVIKEVLRLHPPAPLLIPHHSTM----PTTIQGYHIPAKTIAFINVWAIGRDPAAWDTP 391
>02_04_0066 + 19408431-19408865,19410540-19410620
Length = 171
Score = 27.9 bits (59), Expect = 8.7
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 129 MYAGPTEVQWHAKCRMNAGANHY 151
+Y V WH +CR + G NH+
Sbjct: 143 VYKAQEAVFWHRQCRYHQGENHF 165
>02_01_0181 +
1237167-1237820,1238053-1238142,1238689-1238841,
1238934-1239045,1239460-1239623,1239709-1240047
Length = 503
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 151 YIVGRDPAGLPYPRGDGDLYDPRH 174
YI+G +PAG+ Y G G Y PRH
Sbjct: 394 YILGANPAGMSYMVGFGARY-PRH 416
>01_06_0790 +
32019972-32020101,32020461-32020657,32020790-32020993,
32021444-32021645,32021798-32021886,32022567-32022662,
32022710-32022814,32023516-32023556,32023685-32023777,
32023853-32023970,32024488-32024578,32024693-32024766,
32025008-32025187,32025643-32025681
Length = 552
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 79 KPVLLLHPLGGWTKDDDVPLEVRIKQHKAVL 109
KP L L L W+KD P +V K+ K +L
Sbjct: 520 KPALTLEALTSWSKDKLAPYKVNKKELKKLL 550
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.139 0.436
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,848,876
Number of Sequences: 37544
Number of extensions: 407353
Number of successful extensions: 690
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 684
Number of HSP's gapped (non-prelim): 9
length of query: 261
length of database: 14,793,348
effective HSP length: 81
effective length of query: 180
effective length of database: 11,752,284
effective search space: 2115411120
effective search space used: 2115411120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)
- SilkBase 1999-2023 -