GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000235-TA|BGIBMGA000235-PA|IPR002650|ATP-sulfurylase
         (261 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38981| Best HMM Match : APS_kinase (HMM E-Value=0)                 193   1e-49
SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25)                   29   5.1  

>SB_38981| Best HMM Match : APS_kinase (HMM E-Value=0)
          Length = 578

 Score =  193 bits (471), Expect = 1e-49
 Identities = 85/122 (69%), Positives = 100/122 (81%)

Query: 135 EVQWHAKCRMNAGANHYIVGRDPAGLPYPRGDGDLYDPRHGAMLLKVAPGLNDLEIIPFR 194
           +VQWHAK R+ AG N YIVGRDPAG+P+P    DLY P HG  +L +APGL +LEI+PFR
Sbjct: 457 QVQWHAKARVAAGVNFYIVGRDPAGMPHPDEKRDLYHPSHGRKVLTMAPGLTELEIVPFR 516

Query: 195 VAAYDTSVGKMAFFDPTRKEDFDFISGTRMRGLAKAGKEPPRGFMAPTAWNVLAEYYQSM 254
           VAAY+T   KM FFDP  KEDFDFISGTRMR LA++GKEPP GFMAPTAWN+LAE+YQS+
Sbjct: 517 VAAYNTRHKKMEFFDPEHKEDFDFISGTRMRALARSGKEPPNGFMAPTAWNILAEFYQSV 576

Query: 255 KS 256
           K+
Sbjct: 577 KN 578



 Score =  124 bits (298), Expect = 1e-28
 Identities = 54/66 (81%), Positives = 59/66 (89%)

Query: 1   MIKDSGDWLVGGTLEVFERIRWNDGLDSYRLTPNELRQKFKDLGADAVFAFQLRNPIHNG 60
           M+ +SGDWL GG LEV ERIRWNDGLD YRLTPNELR +FK LG+DAVFAFQLRNP+HNG
Sbjct: 392 MVLESGDWLSGGDLEVIERIRWNDGLDKYRLTPNELRDEFKRLGSDAVFAFQLRNPVHNG 451

Query: 61  HALLMQ 66
           HALLMQ
Sbjct: 452 HALLMQ 457


>SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1324

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/53 (24%), Positives = 25/53 (47%)

Query: 91  TKDDDVPLEVRIKQHKAVLKEGVLDPNSTVLAIFPSPMMYAGPTEVQWHAKCR 143
           T  ++VPL +     + V ++   +  +T +   P P  Y  PT++ W  + R
Sbjct: 176 TNSNEVPLPLNAPNMRIVKRKTSSNSTTTPVTFGPRPRAYTDPTDLLWICRQR 228


>SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25)
          Length = 1962

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 186  NDLEIIPFRVAAYDTSVGKMAFFDPTRKEDFD 217
            N++EI P R   YD    ++  FDP R E+ +
Sbjct: 1754 NNMEIDPLRNVIYDIQGTRLMEFDPMRTEELE 1785


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.139    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,586,776
Number of Sequences: 59808
Number of extensions: 415696
Number of successful extensions: 623
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 619
Number of HSP's gapped (non-prelim): 4
length of query: 261
length of database: 16,821,457
effective HSP length: 81
effective length of query: 180
effective length of database: 11,977,009
effective search space: 2155861620
effective search space used: 2155861620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)