GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000234-TA|BGIBMGA000234-PA|IPR002891|Adenylylsulfate
kinase, IPR002650|ATP-sulfurylase
         (475 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38981| Best HMM Match : APS_kinase (HMM E-Value=0)                 357   1e-98
SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     32   0.88 
SB_18578| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.7  
SB_25816| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.2  
SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.2  

>SB_38981| Best HMM Match : APS_kinase (HMM E-Value=0)
          Length = 578

 Score =  357 bits (878), Expect = 1e-98
 Identities = 169/292 (57%), Positives = 216/292 (73%), Gaps = 4/292 (1%)

Query: 176 GIPAYGLDGDNIRTGLNKNLGFTKEDREENIRRVAEVAKLFADSGVVCLCSFVSPFAEDR 235
           GIPAY LDGDN+RTGLN+NLGFT EDREENIRRV+EVAKLFADSG+VCL +F+SP++ DR
Sbjct: 104 GIPAYTLDGDNMRTGLNRNLGFTPEDREENIRRVSEVAKLFADSGMVCLTAFISPYSRDR 163

Query: 236 EVARRIHTDSDLPFFEVFIDTPLEVCEQRDTKGLYKKARDGQIKGFTGITQEYERPEAPE 295
           + AR++H D++LPFFE+F++TPLE CE+RD KGLYKKAR G IKGFTGI  EY+ P  PE
Sbjct: 164 DRARKLHEDANLPFFEIFVNTPLETCEKRDVKGLYKKARAGIIKGFTGIDAEYQPPHKPE 223

Query: 296 LIVSTVGRSIVESTMDVIRLLESQGIIPSLESNRSGVEELFIHGNRLTSAIEEAARLPQI 355
           L +     S+     +V++LL   G++P    N  G++ELF+    + +A +EA  LP++
Sbjct: 224 LELRAGELSVDNCVQEVVKLLTKSGVLPHAMVN--GIKELFVEPENVDAAKQEADSLPKL 281

Query: 356 ELTTLDLQWVQVLSEGWAYPLKGFMRETEYLQALHSNCVTLPDGSLVNQSVPVVLPVSAE 415
           E+T LDLQWVQVLSEGWA PL GFMRE E+LQ  H     L   S+ NQSVP+VLP++ E
Sbjct: 282 EITLLDLQWVQVLSEGWATPLYGFMRENEFLQCQHFG--ALLQASVSNQSVPIVLPLTTE 339

Query: 416 LKERLAGAAAVALTRGGRPLAVLRGPEFYPHRKEERCSRQFGIYHAGHPYIK 467
            K RL G +A  LT  GR +A++R P+FY HRKEER +RQ+G     HP+IK
Sbjct: 340 NKNRLEGCSAYTLTYEGRNIAIVRNPDFYEHRKEERIARQWGTTSPNHPHIK 391



 Score = 66.9 bits (156), Expect = 3e-11
 Identities = 32/51 (62%), Positives = 40/51 (78%), Gaps = 1/51 (1%)

Query: 95  TNVVEQKHQVSRAKRSRALGSRA-FRGSTVWFTGLSGAGKTSIAFALEAYL 144
           TNV  + H VSR KR + +G+RA FRG +VWFTGLSGAGKT+++ ALE YL
Sbjct: 50  TNVEYKDHSVSRDKRGQVVGTRAGFRGCSVWFTGLSGAGKTTLSMALEDYL 100


>SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 618

 Score = 32.3 bits (70), Expect = 0.88
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 265 DTKGLYKKARDGQIKGFTGITQEYERPEAPELIVSTVGRS 304
           DT   +K +RD +IK F   +QEYER    E ++ T G++
Sbjct: 151 DTGKQFKCSRDAEIKSFHSYSQEYERAHR-EDVIKTEGKT 189


>SB_18578| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 480

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 141 EAYLVSKATTELGQRAVEKNRKVGKFINITNDIVVGIPAYG-----LDGDNIRTGLNKNL 195
           +A  +S   +   Q  ++  R   +    TND+  G PA G     +DG N+RT  N +L
Sbjct: 238 KAVNLSMGDSSFPQGDLDPMRSHERICRTTNDLFFGHPALGHRNPIVDGSNLRTVSNVHL 297

Query: 196 GFTKEDR 202
           G  K  R
Sbjct: 298 GGAKGKR 304


>SB_25816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 13/23 (56%), Positives = 17/23 (73%)

Query: 412 VSAELKERLAGAAAVALTRGGRP 434
           +S+EL   +A A+AVA TR GRP
Sbjct: 1   MSSELPANMAAASAVASTRNGRP 23


>SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1361

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 318 SQGIIPSLESNRSGVEELFIHGNRLTSA----IEEAARLPQIELTTLDLQWVQVLSEGWA 373
           S  ++ +  ++ SGVEEL + GNR        +E      Q  +  ++  WV    E W 
Sbjct: 755 SDMVMETASNDESGVEELSLDGNRYQLGDFVYVEPRESNLQPHVVLIEKLWVDTSGEKWL 814

Query: 374 Y 374
           Y
Sbjct: 815 Y 815


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.133    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,100,936
Number of Sequences: 59808
Number of extensions: 541319
Number of successful extensions: 1074
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1067
Number of HSP's gapped (non-prelim): 6
length of query: 475
length of database: 16,821,457
effective HSP length: 85
effective length of query: 390
effective length of database: 11,737,777
effective search space: 4577733030
effective search space used: 4577733030
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)