GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000234-TA|BGIBMGA000234-PA|IPR002891|Adenylylsulfate
kinase, IPR002650|ATP-sulfurylase
         (475 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68880-1|CAA93098.1|  652|Caenorhabditis elegans Hypothetical pr...   336   1e-92
AF016424-2|AAB65332.1|  720|Caenorhabditis elegans Peroxisome as...    30   3.1  
AB012224-1|BAA76440.1|  720|Caenorhabditis elegans Pex6p homolog...    30   3.1  
AB010968-1|BAA33544.1|  720|Caenorhabditis elegans PEX6 protein.       30   3.1  
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr...    30   4.1  
Z71177-6|CAA94872.2| 1090|Caenorhabditis elegans Hypothetical pr...    29   5.4  
U58747-3|AAL27233.2|  420|Caenorhabditis elegans Hypothetical pr...    29   9.5  
U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical pr...    29   9.5  
AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical ...    29   9.5  

>Z68880-1|CAA93098.1|  652|Caenorhabditis elegans Hypothetical
           protein T14G10.1 protein.
          Length = 652

 Score =  336 bits (827), Expect = 1e-92
 Identities = 184/393 (46%), Positives = 243/393 (61%), Gaps = 49/393 (12%)

Query: 95  TNVVEQKHQVSRAKRSRALGSR-AFRGSTVWFTGLSGAGKTSIAFALEAYLVSKATTELG 153
           TN+  Q+H +SR +R+ A+G    FRG T+WFTGLSGAGKT+I+FAL             
Sbjct: 30  TNITYQEHTISREERAAAVGRHEGFRGCTIWFTGLSGAGKTTISFAL------------- 76

Query: 154 QRAVEKNRKVGKFINITNDIVVGIPAYGLDGDNIRTGLNKNLGFTKEDREENIRRVAEVA 213
           +R + K               +GIP YGLDGDNIR GL KNLGF+KEDR+ENIRRVAEVA
Sbjct: 77  ERTLNK---------------LGIPCYGLDGDNIRHGLCKNLGFSKEDRQENIRRVAEVA 121

Query: 214 KLFADSGVVCLCSFVSPFAEDREVARRIHTDSDLPFFEVFIDTPLEVCEQRDTKGLYKKA 273
           KLFADSG++CL +F+SPF EDR  AR+IH   ++ F EV + T LEVCEQRD K LYKKA
Sbjct: 122 KLFADSGMICLAAFISPFQEDRLDARKIHESENVKFIEVHVSTTLEVCEQRDPKQLYKKA 181

Query: 274 RDGQIKGFTGITQEYERPEAPELIVSTVGRSIVESTMDVIRLLESQGIIPSLESNRSGVE 333
           R GQI GFTGI   YE PE  E+I+      + +    V+  LES+G++P    +   V 
Sbjct: 182 RAGQILGFTGIDSAYEPPENAEIILDAGKDGVQQCVQKVLDHLESKGLLPEQIPDVPAVR 241

Query: 334 ELFIHGN-RLTSAIEEAARLPQIELTTLDLQWVQVLSEGWAYPLKGFMRETEYLQALHSN 392
           ELF+  +  +   ++E+  LP +ELT +DLQW+QVL+EGWA PL GFMRE +YLQ++H  
Sbjct: 242 ELFVSDDLTVAELLKESQNLPTVELTKVDLQWLQVLAEGWATPLSGFMRERQYLQSMHFG 301

Query: 393 CV-------------------TLPDGSLVNQSVPVVLPVSAELKERLAGAAAVALTRGGR 433
            +                   + P    +NQS+P+VLP+S ++K+ L G   +AL   G+
Sbjct: 302 QLLDLKHKVAFVGEKSDDKEDSWPMMDDINQSIPIVLPISDDVKKGLEGVTRIALKYNGQ 361

Query: 434 PLAVLRGPEFYPHRKEERCSRQFGIYHAGHPYI 466
             A+L  PE + HRK+ER  RQFG     HP +
Sbjct: 362 VYAILSDPEIFEHRKDERVCRQFGTNDPRHPAV 394


>AF016424-2|AAB65332.1|  720|Caenorhabditis elegans Peroxisome
           assembly factor protein6 protein.
          Length = 720

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 17/42 (40%), Positives = 22/42 (52%)

Query: 99  EQKHQVSRAKRSRALGSRAFRGSTVWFTGLSGAGKTSIAFAL 140
           E K  V  + R+   GSRA + S +   G  G GKT IA A+
Sbjct: 472 ETKQTVLESIRTNLFGSRALKRSGIILYGSPGCGKTLIAKAV 513


>AB012224-1|BAA76440.1|  720|Caenorhabditis elegans Pex6p homolog
           protein.
          Length = 720

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 17/42 (40%), Positives = 22/42 (52%)

Query: 99  EQKHQVSRAKRSRALGSRAFRGSTVWFTGLSGAGKTSIAFAL 140
           E K  V  + R+   GSRA + S +   G  G GKT IA A+
Sbjct: 472 ETKQTVLESIRTNLFGSRALKRSGIILYGSPGCGKTLIAKAV 513


>AB010968-1|BAA33544.1|  720|Caenorhabditis elegans PEX6 protein.
          Length = 720

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 17/42 (40%), Positives = 22/42 (52%)

Query: 99  EQKHQVSRAKRSRALGSRAFRGSTVWFTGLSGAGKTSIAFAL 140
           E K  V  + R+   GSRA + S +   G  G GKT IA A+
Sbjct: 472 ETKQTVLESIRTNLFGSRALKRSGIILYGSPGCGKTLIAKAV 513


>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical
           protein B0024.8 protein.
          Length = 1185

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 4/94 (4%)

Query: 291 PEAPELIVSTVGRSIVESTMDVIRLLESQGIIPSLESNRSGVEELFIHGNRLTSAIEEAA 350
           P    L+      S +++  DV+  +E +G + SLES  +    L    +R+ S      
Sbjct: 899 PNFDRLMRKNALESEIKAVKDVLANVEKRGGVDSLESTANLSGSL----SRIGSTRRVQK 954

Query: 351 RLPQIELTTLDLQWVQVLSEGWAYPLKGFMRETE 384
           +LP      LD    ++L+ GW   L G  R  E
Sbjct: 955 KLPDSLQLDLDEIRTELLAAGWERRLTGLQRFEE 988


>Z71177-6|CAA94872.2| 1090|Caenorhabditis elegans Hypothetical protein
            AC3.5 protein.
          Length = 1090

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 299  STVGRSIVESTMDVIRLLESQGIIPSLESNRSGVEELFIHGNRLTSAIEEAARLPQIELT 358
            STV +   ++  + +  +   GII   E  +S +E    H ++ T  IE   +  +IE  
Sbjct: 995  STVLKKKFKNDPETLNAIADAGIILDNEREKSMIETFMEHHHKSTHGIESLDK--KIEEA 1052

Query: 359  TLDLQW 364
            T D+ W
Sbjct: 1053 TTDIYW 1058


>U58747-3|AAL27233.2|  420|Caenorhabditis elegans Hypothetical
           protein C55F2.1a protein.
          Length = 420

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 437 VLRGPEFYPHRKEERCSRQFGIYHAGHP 464
           V+    F P R    C++QFG+ +  HP
Sbjct: 363 VMSSDAFLPFRDNVDCAKQFGVSYVAHP 390


>U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical
           protein C55F2.1b protein.
          Length = 594

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 437 VLRGPEFYPHRKEERCSRQFGIYHAGHP 464
           V+    F P R    C++QFG+ +  HP
Sbjct: 537 VMSSDAFLPFRDNVDCAKQFGVSYVAHP 564


>AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical
           protein Y49A3A.2 protein.
          Length = 606

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 11/129 (8%)

Query: 119 RGSTVWFTGLSGAGKTSIAFALEAYLVSKATTEL--GQRAVEKNRKVGKFINITNDIVVG 176
           +G T    G  G GKT I+ +L  Y  S A   +  G+R  E +  +  F  +T + V G
Sbjct: 231 QGGTTAIPGAFGCGKTVISQSLSKYSNSDAIIYVGCGERGNEMSEVLRDFPELTME-VEG 289

Query: 177 IPAYGLDGDNIRTGLNKNL-GFTKEDREENIRRVAEVAKLFADSG--VVCLCSFVSPFAE 233
           +    +     RT L  N        RE +I     +A+ F D G  V  +    S +AE
Sbjct: 290 VTTSIMK----RTALVANTSNMPVAAREASIYTGITLAEYFRDMGLNVAMMADSTSRWAE 345

Query: 234 D-REVARRI 241
             RE++ R+
Sbjct: 346 ALREISGRL 354


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.133    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,380,522
Number of Sequences: 27539
Number of extensions: 409409
Number of successful extensions: 953
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 942
Number of HSP's gapped (non-prelim): 11
length of query: 475
length of database: 12,573,161
effective HSP length: 84
effective length of query: 391
effective length of database: 10,259,885
effective search space: 4011615035
effective search space used: 4011615035
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)