GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000234-TA|BGIBMGA000234-PA|IPR002891|Adenylylsulfate
kinase, IPR002650|ATP-sulfurylase
         (475 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    26   0.79 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.2  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   4.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   9.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   9.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   9.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.8 bits (54), Expect = 0.79
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 6/67 (8%)

Query: 300 TVGRSIVESTMDVIRLLESQGIIPSLES----NRSGVEELFIHGNRLTSAIEEAARLPQI 355
           TVG  +      + RL  S   I S++     N S ++EL + GN LTS + +A R   +
Sbjct: 397 TVGAQLFNGLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTS-VPDALRDLAL 455

Query: 356 ELTTLDL 362
            L TLDL
Sbjct: 456 -LKTLDL 461


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/30 (30%), Positives = 19/30 (63%)

Query: 303 RSIVESTMDVIRLLESQGIIPSLESNRSGV 332
           R +V S++  +R+ + +G++P +    SGV
Sbjct: 217 RQVVVSSVANVRIADHRGVMPPVILENSGV 246


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/30 (30%), Positives = 19/30 (63%)

Query: 303 RSIVESTMDVIRLLESQGIIPSLESNRSGV 332
           R +V S++  +R+ + +G++P +    SGV
Sbjct: 217 RQVVVSSVANVRIADHRGVMPPVILENSGV 246


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query: 180 YGLDGDNIRTGLNKNLGFTKEDREENIRRVAE 211
           Y ++G+NI    N N+   K+   + + ++AE
Sbjct: 156 YQMNGNNITNFKNSNIFQLKQHMRDTMNKIAE 187


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 145 VSKATTELGQRAVEKNRKVGKFINITNDIVVGIPA 179
           V K  T+LG+   E+     K I + N+  + +PA
Sbjct: 323 VQKELTDLGKLGEEEKADWWKDIMLLNEKTLAVPA 357


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 145 VSKATTELGQRAVEKNRKVGKFINITNDIVVGIPA 179
           V K  T+LG+   E+     K I + N+  + +PA
Sbjct: 323 VQKELTDLGKLGEEEKADWWKDIMLLNEKTLAVPA 357


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 145 VSKATTELGQRAVEKNRKVGKFINITNDIVVGIPA 179
           V K  T+LG+   E+     K I + N+  + +PA
Sbjct: 323 VQKELTDLGKLGEEEKADWWKDIMLLNEKTLAVPA 357


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,396
Number of Sequences: 429
Number of extensions: 4538
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 7
length of query: 475
length of database: 140,377
effective HSP length: 60
effective length of query: 415
effective length of database: 114,637
effective search space: 47574355
effective search space used: 47574355
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)