Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000233-TA|BGIBMGA000233-PA|IPR009832|Protein of unknown
function DUF1397
         (155 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_34355| Best HMM Match : DUF827 (HMM E-Value=0.011)                  27   7.0  

>SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 104 GQNANFDLNSLSPDNLPTLSFDKAEENAPGSAD 136
           G  +N+DLNS+ PD L +L+ + + E     +D
Sbjct: 446 GMLSNYDLNSVFPDFLDSLTGEDSHEQTLSRSD 478


>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2162

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/44 (31%), Positives = 19/44 (43%)

Query: 69  CFKDGDRIALFISEGGAECFQEKQSDLQKCYNQTAGQNANFDLN 112
           C KD D  +L   + GA C     +   +C   T G N   D+N
Sbjct: 727 CEKDIDECSLGYCKNGATCTNTPGNYSCQCTEFTNGTNCELDIN 770


>SB_34355| Best HMM Match : DUF827 (HMM E-Value=0.011)
          Length = 501

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 9/51 (17%)

Query: 1   MEILQQELEEAKPNGMIDEVFKKYCLQKTNFMNCFTTMLDASKPCFTVKER 51
           +++LQQEL  AK N         YC+QK  F+N        +    ++KER
Sbjct: 284 IKVLQQELNSAKMN---------YCVQKIKFINAKRRCATLANELDSMKER 325


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.133    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,068,297
Number of Sequences: 59808
Number of extensions: 192388
Number of successful extensions: 388
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 383
Number of HSP's gapped (non-prelim): 5
length of query: 155
length of database: 16,821,457
effective HSP length: 76
effective length of query: 79
effective length of database: 12,276,049
effective search space: 969807871
effective search space used: 969807871
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)