GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000233-TA|BGIBMGA000233-PA|IPR009832|Protein of unknown
function DUF1397
         (155 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   3.9  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    25   5.2  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    25   6.8  
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    25   6.8  
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    24   9.0  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    24   9.0  

>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 84   GAECFQEKQSDLQKCYNQTAGQNANFDLNSLSPDNL 119
            GAE   + + DL+KC  +   + A FD  S   +NL
Sbjct: 1830 GAEFIVKFKEDLEKCAAEEKEKQATFDNYSEKVENL 1865


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 92  QSDLQKCYNQTAGQNANFDLNSLSPDNLPTLSFDKAEENA--PGSADVL 138
           QS L+ C+N    +  +  +  L P   P L    AE+ A  P  ADVL
Sbjct: 474 QSLLESCFNNNNVETIDTTIRRLDPSLAPILLDKLAEKLALRPMRADVL 522


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 10  EAKPNGMIDEVFKKYCLQKTNFMNCFTTMLDASKPCFTVKERD 52
           EAK  G+ID+ +KK  +     +    T+ + + P + + E D
Sbjct: 85  EAKNIGIIDKYYKKNFILPKTLIRFSLTVEECTNPEYCMDEHD 127


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 100 NQTAGQNANFDLNSLSPDNLPTLSFDKAEENAPGSADVLFAK 141
           N  A    NF L+S  PD    L FD+   + P S D  F K
Sbjct: 212 NHDASFLPNFHLSS--PDGKKFLKFDRILADVPCSGDGTFRK 251


>SPAC1F5.08c |yam8|ehs1|calcium transport
          protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 55 NTVYNVSRELADFVCFKDGDRIALFIS 81
          NT YNVS  L+    F   + + L+IS
Sbjct: 55 NTAYNVSLTLSTCTAFDGANDLMLYIS 81


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 114 LSPDNLPTLSFDKAEENAP 132
           + PD+ PTLSF    E  P
Sbjct: 454 VGPDSTPTLSFTSGSEGIP 472


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.133    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 716,289
Number of Sequences: 5004
Number of extensions: 29124
Number of successful extensions: 66
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 61
Number of HSP's gapped (non-prelim): 7
length of query: 155
length of database: 2,362,478
effective HSP length: 67
effective length of query: 88
effective length of database: 2,027,210
effective search space: 178394480
effective search space used: 178394480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)