GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000233-TA|BGIBMGA000233-PA|IPR009832|Protein of unknown
function DUF1397
         (155 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1561 - 34435565-34436530,34437373-34437473,34438099-34438243     28   2.9  
08_01_0191 + 1590948-1591607,1591694-1592176,1592449-1592451,159...    28   3.9  
08_02_0635 + 19551869-19551996,19553131-19553233                       27   9.0  
02_03_0089 - 15091579-15091989,15092088-15092588,15092704-150929...    27   9.0  

>04_04_1561 - 34435565-34436530,34437373-34437473,34438099-34438243
          Length = 403

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 116 PDNLPTLSFDKAEENAPGSADVLFAKMATVAMGLLAVALV 155
           P  LP+L FD+  +   G+A VL A  A  ++   A + V
Sbjct: 243 PPPLPSLPFDQPRDRVSGAATVLLAVDAVSSLAAAAASAV 282


>08_01_0191 +
           1590948-1591607,1591694-1592176,1592449-1592451,
           1592555-1592992
          Length = 527

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 52  DHLNTVYNVSRELADFVCFKDGDRIALFISEGGA 85
           D L+  + VSRE A  V F  G  +A+F  + GA
Sbjct: 474 DVLDNAFGVSREEARMVKFGRGQELAIFSPKSGA 507


>08_02_0635 + 19551869-19551996,19553131-19553233
          Length = 76

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 9/19 (47%), Positives = 15/19 (78%)

Query: 15 GMIDEVFKKYCLQKTNFMN 33
          G+++  F K CLQ+TNF++
Sbjct: 38 GVVEWSFNKICLQRTNFIH 56


>02_03_0089 -
           15091579-15091989,15092088-15092588,15092704-15092984,
           15093104-15093443
          Length = 510

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 52  DHLNTVYNVSRELADFVCFKDGDRIALFISEGGAECFQEKQ 92
           D +   Y +SRE +  V F  GD +A+F    G + + E Q
Sbjct: 466 DVVANAYRLSREDSRHVKFNRGDEMAVFAPRRGPQQYAEWQ 506


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.133    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,374,247
Number of Sequences: 37544
Number of extensions: 165264
Number of successful extensions: 278
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 274
Number of HSP's gapped (non-prelim): 4
length of query: 155
length of database: 14,793,348
effective HSP length: 76
effective length of query: 79
effective length of database: 11,940,004
effective search space: 943260316
effective search space used: 943260316
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)