GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000233-TA|BGIBMGA000233-PA|IPR009832|Protein of unknown
function DUF1397
         (155 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80455-2|AAB37882.2|  420|Caenorhabditis elegans Elav-type rna b...    30   0.64 
U80455-1|AAB37881.1|  584|Caenorhabditis elegans Elav-type rna b...    30   0.64 
U53931-1|AAA98566.1|  584|Caenorhabditis elegans elav-type ribon...    30   0.64 
Z81104-5|CAE17892.1|  285|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z81097-1|CAB03175.1|  491|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U96695-1|AAB57697.1|  491|Caenorhabditis elegans deoxyuridinetri...    27   6.0  
AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical ...    27   7.9  

>U80455-2|AAB37882.2|  420|Caenorhabditis elegans Elav-type rna
           binding protein familyprotein 1, isoform b protein.
          Length = 420

 Score = 30.3 bits (65), Expect = 0.64
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 70  FKDGDRIALFISEGG---AECFQEKQSDLQKCYNQTAGQNANFDLNSLSPDN 118
           F D D I  F   GG   A+ F +K ++L KC+   + +NA    N++S  N
Sbjct: 346 FGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMN 397


>U80455-1|AAB37881.1|  584|Caenorhabditis elegans Elav-type rna
           binding protein familyprotein 1, isoform a protein.
          Length = 584

 Score = 30.3 bits (65), Expect = 0.64
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 70  FKDGDRIALFISEGG---AECFQEKQSDLQKCYNQTAGQNANFDLNSLSPDN 118
           F D D I  F   GG   A+ F +K ++L KC+   + +NA    N++S  N
Sbjct: 510 FGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMN 561


>U53931-1|AAA98566.1|  584|Caenorhabditis elegans elav-type
           ribonucleoprotein protein.
          Length = 584

 Score = 30.3 bits (65), Expect = 0.64
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 70  FKDGDRIALFISEGG---AECFQEKQSDLQKCYNQTAGQNANFDLNSLSPDN 118
           F D D I  F   GG   A+ F +K ++L KC+   + +NA    N++S  N
Sbjct: 510 FGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMN 561


>Z81104-5|CAE17892.1|  285|Caenorhabditis elegans Hypothetical
          protein M199.7 protein.
          Length = 285

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 25 CLQKT-NFMNCFTTMLDASKPCFTVKERDHLNTVYNVSRELADFVCFK 71
          C QK     +C T +LD S  CFT K +    TV   SRE    V FK
Sbjct: 50 CAQKCYETEDCVTAVLDTSGTCFTCKFKAAW-TVKKTSREGKTKVAFK 96


>Z81097-1|CAB03175.1|  491|Caenorhabditis elegans Hypothetical
           protein K07A1.2 protein.
          Length = 491

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 71  KDGDRIALFISEGGAECFQEKQSDLQKCYNQTAGQNANFDLNSLSPDNLPTLSFDKAEE 129
           K GDRIA  I E    C  E  S+L+   ++ AG   +   N++  +  P L   K E+
Sbjct: 285 KKGDRIAQLICEKIGHCVYEAASELENT-DRGAGGFGSTGQNTMEAE--PALKKSKTEQ 340


>U96695-1|AAB57697.1|  491|Caenorhabditis elegans
           deoxyuridinetriphosphatase protein.
          Length = 491

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 71  KDGDRIALFISEGGAECFQEKQSDLQKCYNQTAGQNANFDLNSLSPDNLPTLSFDKAEE 129
           K GDRIA  I E    C  E  S+L+   ++ AG   +   N++  +  P L   K E+
Sbjct: 285 KKGDRIAQLICEKIGHCVYEAASELENT-DRGAGGFGSTGQNTMEAE--PALKKSKTEQ 340


>AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical
           protein Y116F11B.3 protein.
          Length = 1042

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 62  RELADFVCFKDGDRIALFISEGGAECF---QEKQSDLQKCYNQTAGQNANFDLNSLSP 116
           R L DF  F D     L +  GG+ C+   Q+  +D+++    TAG++   DL  L+P
Sbjct: 198 RRLYDFWQFNDFVGNTL-MQIGGSNCYGRVQQGFADIRQAMKTTAGRSQISDLFQLNP 254


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.133    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,889,898
Number of Sequences: 27539
Number of extensions: 155894
Number of successful extensions: 361
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 359
Number of HSP's gapped (non-prelim): 9
length of query: 155
length of database: 12,573,161
effective HSP length: 76
effective length of query: 79
effective length of database: 10,480,197
effective search space: 827935563
effective search space used: 827935563
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)