GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000233-TA|BGIBMGA000233-PA|IPR009832|Protein of unknown
function DUF1397
         (155 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.9  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   4.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    20   9.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    20   9.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   9.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 16/58 (27%), Positives = 23/58 (39%)

Query: 90  EKQSDLQKCYNQTAGQNANFDLNSLSPDNLPTLSFDKAEENAPGSADVLFAKMATVAM 147
           E    L KCY    G+  + D   LSP +  + S   AE       D + A +   A+
Sbjct: 419 EDWKPLDKCYFCLDGKLPHDDQPPLSPQSDSSSSSRSAESPMSVQVDPMAASVVAAAL 476


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 130 NAPGSADVLFAKMATVAMGLLAVALV 155
           N   +A +L   M TV +GLL  AL+
Sbjct: 304 NLTATAQMLGLYMVTVILGLLFHALI 329


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 13  PNGMIDEVFKKYCLQKTN 30
           P   +++ F  YC  KTN
Sbjct: 207 PRFTLEKFFTDYCNSKTN 224


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 13  PNGMIDEVFKKYCLQKTN 30
           P   +++ F  YC  KTN
Sbjct: 207 PRFTLEKFFTDYCNSKTN 224


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 87   CFQEKQSDLQKCYNQTAGQNANFDLNSLS 115
            CF   +  L  CY   +  + +F L+SL+
Sbjct: 1057 CFDSDRERLYDCYVCYSPNDEDFVLHSLA 1085


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.133    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,748
Number of Sequences: 429
Number of extensions: 1629
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 155
length of database: 140,377
effective HSP length: 53
effective length of query: 102
effective length of database: 117,640
effective search space: 11999280
effective search space used: 11999280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)