GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000233-TA|BGIBMGA000233-PA|IPR009832|Protein of unknown
function DUF1397
         (155 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41870.1 68415.m05177 remorin family protein contains Pfam do...    27   5.7  
At5g25780.1 68418.m03060 eukaryotic translation initiation facto...    27   7.5  
At4g32030.2 68417.m04559 expressed protein                             26   10.0 
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ...    26   10.0 

>At2g41870.1 68415.m05177 remorin family protein contains Pfam
           domain, PF03763: Remorin, C-terminal region
          Length = 274

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 90  EKQSDLQKCYNQTAGQNANFDLNSLSPDNLPTLSFDKAEENAPGSADV 137
           E+Q +L + +  T  +     L ++ PD  P    D   +N PG + V
Sbjct: 105 ERQDELMRIHEDTDHEEETNPL-AIVPDQYPGSGLDPGSDNGPGQSRV 151


>At5g25780.1 68418.m03060 eukaryotic translation initiation factor 3
           subunit 9, putative / eIF-3 eta, putative / eIF3b,
           putative nearly identical to SP|Q9C5Z1 Eukaryotic
           translation initiation factor 3 subunit 9 (eIF-3 eta)
           (eIF3 p110) (eIF3b) {Arabidopsis thaliana}
          Length = 714

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 16/50 (32%), Positives = 23/50 (46%)

Query: 86  ECFQEKQSDLQKCYNQTAGQNANFDLNSLSPDNLPTLSFDKAEENAPGSA 135
           E F++ +  ++K YNQ      N  L  + PD   TL +   E N P  A
Sbjct: 70  EKFEKLEGVVKKIYNQLGVIKENGLLMPVDPDTKMTLGYCFIEFNTPQEA 119


>At4g32030.2 68417.m04559 expressed protein
          Length = 204

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 33  NCFTTMLDASKPCFTVKERDHLNTVYNVSRELADFVCF 70
           +CF+  L   K  F +K  ++L     +  E  DF C+
Sbjct: 137 SCFSKRLKKRKSSFELKNEENLKLKERLDLEKVDFRCY 174


>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
           protein 
          Length = 987

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 84  GAECFQEK-QSDLQK-----CYNQTAGQNANFDLNSLSPDNLPTLSFDKAEENAPGSADV 137
           G++  +EK  SD +K       + ++ Q  N + + LS D++ +   +K++EN P S+ V
Sbjct: 906 GSKSVKEKPHSDYEKVDDGDANSDSSQQERNLEGHLLSLDSMSSQDVEKSKENPPSSSSV 965


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.133    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,641,527
Number of Sequences: 28952
Number of extensions: 142942
Number of successful extensions: 284
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 282
Number of HSP's gapped (non-prelim): 4
length of query: 155
length of database: 12,070,560
effective HSP length: 75
effective length of query: 80
effective length of database: 9,899,160
effective search space: 791932800
effective search space used: 791932800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)