Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000231-TA|BGIBMGA000231-PA|IPR002379|ATPase, F0/V0
complex, subunit C, IPR000245|ATPase, V0 complex, proteolipid subunit
C,
         (205 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)              71   9e-13
SB_13711| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_44848| Best HMM Match : COQ7 (HMM E-Value=1.6)                      27   8.3  
SB_28246| Best HMM Match : M (HMM E-Value=0.0007)                      27   8.3  

>SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 70.5 bits (165), Expect = 9e-13
 Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 11/153 (7%)

Query: 47  WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 106
           +G +G   ++  S +GAA G   +G  I    V  P +  K++I V+    +AIYGL+ A
Sbjct: 13  FGVMGATAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 72

Query: 107 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXXXXXXXXX 166
           +++           +S+S K       ++  GAGL+VGL  L                  
Sbjct: 73  VLIG----------SSIS-KDYTLYKSFLDLGAGLSVGLSGLAAGFAIGIVGDAGVRGTA 121

Query: 167 XXXXXFVKILIVEIFGSAIGLFGLIVGIYMTSK 199
                FV ++++ IF   +GL+GLIV + +T+K
Sbjct: 122 QQPRLFVGMILILIFAEVLGLYGLIVALILTTK 154


>SB_13711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 473

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 83  RIKTKNLISVIF-CEAVAIYGLITAIVLSGMLEKYSEPFTSVSVKQQNWMA 132
           R+  K L+ VIF CEAV ++GL+TAI +       S P   + ++++ +M+
Sbjct: 167 RVPCKILVFVIFTCEAV-MFGLLTAIAIDKYTNIIS-PLKGLVLEERKFMS 215


>SB_44848| Best HMM Match : COQ7 (HMM E-Value=1.6)
          Length = 340

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 6/78 (7%)

Query: 51  GIAFSVALSVVGAAMGIHTTGVSIVGG---GVK-APRIKTKN-LISVIFCEAVAIYGLIT 105
           G+ +S  +   G   G+  +G+ +  G   GVK +  + T   L  V +   V  YGL+T
Sbjct: 68  GVKYSGLVLTYGPLTGVKYSGLVLTYGPLTGVKYSGLVLTYGPLTGVKYSGLVLTYGLLT 127

Query: 106 AIVLSGMLEKYSEPFTSV 123
            +  SG++  Y  P T V
Sbjct: 128 GVKYSGLVLTYG-PLTGV 144


>SB_28246| Best HMM Match : M (HMM E-Value=0.0007)
          Length = 1121

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 6/78 (7%)

Query: 51  GIAFSVALSVVGAAMGIHTTGVSIVGG---GVK-APRIKTKN-LISVIFCEAVAIYGLIT 105
           G+ +S  +   G   G+  +G+ +  G   GVK +  + T   L  V +   V  YGL+T
Sbjct: 835 GVKYSGLVLTYGLLTGVKYSGLVLTYGLLTGVKYSGLVLTYGPLTGVKYSGLVLTYGLLT 894

Query: 106 AIVLSGMLEKYSEPFTSV 123
            +  SG++  Y  P T V
Sbjct: 895 GVKYSGLVLTYG-PLTGV 911


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.327    0.143    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,067,470
Number of Sequences: 59808
Number of extensions: 162730
Number of successful extensions: 599
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 584
Number of HSP's gapped (non-prelim): 16
length of query: 205
length of database: 16,821,457
effective HSP length: 79
effective length of query: 126
effective length of database: 12,096,625
effective search space: 1524174750
effective search space used: 1524174750
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 58 (27.5 bits)