Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000231-TA|BGIBMGA000231-PA|IPR002379|ATPase, F0/V0
complex, subunit C, IPR000245|ATPase, V0 complex, proteolipid subunit
C,
(205 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 167 8e-43
SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po... 76 3e-15
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch... 71 2e-13
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po... 29 0.37
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 27 1.5
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc... 26 4.5
>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 199
Score = 167 bits (407), Expect = 8e-43
Identities = 86/181 (47%), Positives = 107/181 (59%), Gaps = 3/181 (1%)
Query: 19 IFSLYYVLNGKGEQISLGWFLENTSPYMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGG 78
I LY + + GE G FL +TSPY WG LGIA VA ++GAA GI G SI+GG
Sbjct: 17 IVGLYMLFHNSGESFDFGSFLLDTSPYTWGLLGIASCVAFGIIGAAWGIFICGTSILGGA 76
Query: 79 VKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFG 138
VKAPRIKTKNLIS+IFCE VAIY LI AIV S K ++ + + ++ G+ +F
Sbjct: 77 VKAPRIKTKNLISIIFCEVVAIYSLIIAIVFSA---KINDINPAGFYTKSHYYTGFALFW 133
Query: 139 AGLAVGLVNLFCXXXXXXXXXXXXXXXXXXXXXFVKILIVEIFGSAIGLFGLIVGIYMTS 198
G+ VGL NL C FVK+L+VEIFGS +GLFGLIVG+ +
Sbjct: 134 GGITVGLCNLICGVCVGITGSSAALADAQDASLFVKVLVVEIFGSVLGLFGLIVGLLIGG 193
Query: 199 K 199
K
Sbjct: 194 K 194
>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 161
Score = 76.2 bits (179), Expect = 3e-15
Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 47 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 106
+G +G ++ + GAA G GV I GV P + KN I V+ +AIYGL+ +
Sbjct: 13 FGVMGCTAAIVFASFGAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMAGIIAIYGLVVS 72
Query: 107 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXXXXXXXXX 166
+++SG L++ + +G++ GAGL+VGL L
Sbjct: 73 VLISGNLKQILSLY-----------SGFIQLGAGLSVGLAGLAAGFAIGIVGDAGVRGTA 121
Query: 167 XXXXXFVKILIVEIFGSAIGLFGLIVGIYMTSK 199
FV ++++ IF +GL+GLIV + + ++
Sbjct: 122 QQPRLFVAMILILIFAEVLGLYGLIVALLLNTR 154
>SPAC732.01 |vma11||V-type ATPase proteolipid
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 70.5 bits (165), Expect = 2e-13
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 9/153 (5%)
Query: 47 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 106
+G G+ S+ S +GA G G I G P I K+LI V+ + +YGL+ +
Sbjct: 13 FGFAGVCASMVFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGVYGLVMS 72
Query: 107 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXXXXXXXXX 166
++++G + P S+ +G++ AGLAVGL +
Sbjct: 73 VLIAGDM----SPDNDYSL-----FSGFIHLSAGLAVGLTGVAAGYAIGVVGDRGVQSFM 123
Query: 167 XXXXXFVKILIVEIFGSAIGLFGLIVGIYMTSK 199
FV ++++ IF +GL+GLIVG+ + +K
Sbjct: 124 RQDRIFVSMVLILIFAEVLGLYGLIVGLILQTK 156
>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 452
Score = 29.5 bits (63), Expect = 0.37
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 3 YFLSYLFVLLVGLAIPIF-SLYYVLNGKGEQISLGWFLENTSPY 45
Y L L L+G+ F ++YY L + + +L FL+NT PY
Sbjct: 302 YALRDLAAFLLGIVCDRFGNVYYTLKPRVTRTALKAFLDNTKPY 345
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 27.5 bits (58), Expect = 1.5
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 22 LYYVLNGKGEQISLGWFLENTSPYMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKA 81
L + LN K ++ + S + WG S+AL++VGA GI G VG ++
Sbjct: 785 LTFGLNSKDRKLDAKRLTKIVSGFHWGICQNVDSIALNIVGA--GIIRFGTQNVGCLLRI 842
Query: 82 PRIKTKNLI 90
+NLI
Sbjct: 843 EPNYEQNLI 851
>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
Lag1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 98 VAIYGLITAIVLSGMLEKYSEPFTSVSVKQQNWMAG 133
++I + A +LS L Y+EPF +S KQ + G
Sbjct: 74 LSIIAICFACLLSPSLRPYAEPFIFLSYKQPDGSYG 109
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.327 0.143 0.429
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 746,976
Number of Sequences: 5004
Number of extensions: 25488
Number of successful extensions: 84
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69
Number of HSP's gapped (non-prelim): 8
length of query: 205
length of database: 2,362,478
effective HSP length: 70
effective length of query: 135
effective length of database: 2,012,198
effective search space: 271646730
effective search space used: 271646730
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 52 (25.0 bits)
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