Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000231-TA|BGIBMGA000231-PA|IPR002379|ATPase, F0/V0
complex, subunit C, IPR000245|ATPase, V0 complex, proteolipid subunit
C,
(205 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0664 + 24122958-24123070,24123184-24123261,24125040-241252... 153 7e-38
12_01_0443 - 3498848-3498980,3500504-3500789,3500928-3501006 81 5e-16
05_01_0043 - 295041-295173,296252-296537,296616-296697 81 5e-16
11_01_0440 - 3358786-3358918,3359861-3360146,3360460-3360538 81 6e-16
01_07_0267 + 42410174-42410252,42410679-42411097 77 1e-14
02_04_0181 - 20705307-20705439,20705991-20706037,20706181-207062... 62 4e-10
12_02_0364 - 18020249-18020737,18021075-18021502,18021563-180216... 37 0.013
11_04_0057 - 12953479-12954364,12954484-12955034,12955125-129553... 28 6.1
04_04_0819 - 28312667-28313219,28315157-28316430 28 6.1
04_04_0197 + 23499527-23500603 28 6.1
07_01_1035 + 8998266-8998349,8999394-8999441,8999714-8999792,899... 27 8.1
>01_05_0664 +
24122958-24123070,24123184-24123261,24125040-24125210,
24125288-24125456
Length = 176
Score = 153 bits (372), Expect = 7e-38
Identities = 81/161 (50%), Positives = 104/161 (64%), Gaps = 3/161 (1%)
Query: 39 LENTSPYMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAV 98
L SPY + +GIA S+ +SV+GAA GI TG S++G +KAPRI +KNLISVIFCEAV
Sbjct: 12 LVQISPYTFSAIGIAVSIGVSVLGAAWGIFITGSSLIGAAIKAPRITSKNLISVIFCEAV 71
Query: 99 AIYGLITAIVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXX 158
AIYG+I AI+L LE S P T++ ++ AGY +F +GL VG NL C
Sbjct: 72 AIYGVIVAIILQTKLE--SVP-TALVHHPESLRAGYAIFASGLIVGFANLVCGVCVGIIG 128
Query: 159 XXXXXXXXXXXXXFVKILIVEIFGSAIGLFGLIVGIYMTSK 199
FVKIL++EIFGSA+GLFG+IVGI M+S+
Sbjct: 129 SSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSSQ 169
>12_01_0443 - 3498848-3498980,3500504-3500789,3500928-3501006
Length = 165
Score = 81.4 bits (192), Expect = 5e-16
Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 9/160 (5%)
Query: 40 ENTSPYMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVA 99
+ T+P+ +G LG A ++ S +GAA G +GV + GV P + K+++ V+ +
Sbjct: 8 DETAPF-FGFLGAASALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLG 66
Query: 100 IYGLITAIVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXX 159
IYGLI A+++S + ++P+ GY +GLA GL L
Sbjct: 67 IYGLIIAVIISTGINPKAKPYYLFD--------GYAHLSSGLACGLAGLAAGMAIGIVGD 118
Query: 160 XXXXXXXXXXXXFVKILIVEIFGSAIGLFGLIVGIYMTSK 199
FV ++++ IF A+ L+GLIVGI ++S+
Sbjct: 119 AGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSR 158
>05_01_0043 - 295041-295173,296252-296537,296616-296697
Length = 166
Score = 81.4 bits (192), Expect = 5e-16
Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 9/160 (5%)
Query: 40 ENTSPYMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVA 99
+ T+P+ +G LG A ++ S +GAA G +GV + GV P + K+++ V+ +
Sbjct: 9 DETAPF-FGFLGAASALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLG 67
Query: 100 IYGLITAIVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXX 159
IYGLI A+++S + ++P+ GY +GLA GL L
Sbjct: 68 IYGLIIAVIISTGINPKAKPYFLFD--------GYAHLSSGLACGLAGLAAGMAIGIVGD 119
Query: 160 XXXXXXXXXXXXFVKILIVEIFGSAIGLFGLIVGIYMTSK 199
FV ++++ IF A+ L+GLIVGI ++S+
Sbjct: 120 AGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSR 159
>11_01_0440 - 3358786-3358918,3359861-3360146,3360460-3360538
Length = 165
Score = 81.0 bits (191), Expect = 6e-16
Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 9/160 (5%)
Query: 40 ENTSPYMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVA 99
+ T+P+ +G LG A ++ S +GAA G +GV + GV P + K+++ V+ +
Sbjct: 8 DETAPF-FGFLGAASALIFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLG 66
Query: 100 IYGLITAIVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXX 159
IYGLI A+++S + ++P+ GY +GLA GL L
Sbjct: 67 IYGLIIAVIISTGINPKAKPYYLFD--------GYAHLSSGLACGLAGLAAGMAIGIVGD 118
Query: 160 XXXXXXXXXXXXFVKILIVEIFGSAIGLFGLIVGIYMTSK 199
FV ++++ IF A+ L+GLIVGI ++S+
Sbjct: 119 AGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSR 158
>01_07_0267 + 42410174-42410252,42410679-42411097
Length = 165
Score = 77.0 bits (181), Expect = 1e-14
Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 9/157 (5%)
Query: 43 SPYMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYG 102
+P++ G +G A ++ S +GAA G +GV + GV P + K+++ V+ + IYG
Sbjct: 11 APFL-GFIGAALALVFSCMGAAYGTARSGVGVAHMGVMRPELVMKSIVPVVMAGVLGIYG 69
Query: 103 LITAIVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXXXXX 162
LI A++++ + + P+ G V AGLA GL L
Sbjct: 70 LIIAVIITTGINPTAMPYYHFD--------GSVHLAAGLATGLCALAAGLAIGVVGDAGV 121
Query: 163 XXXXXXXXXFVKILIVEIFGSAIGLFGLIVGIYMTSK 199
FV ++++ IF A+GL+GLIVGI ++S+
Sbjct: 122 RANAQQPKLFVGMILILIFAEALGLYGLIVGIILSSR 158
>02_04_0181 -
20705307-20705439,20705991-20706037,20706181-20706229,
20706685-20707055
Length = 199
Score = 61.7 bits (143), Expect = 4e-10
Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 40 ENTSPYMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVA 99
+ T+P+ +G LG A ++ S +GAA G +GV + GV P + K+++ V+ +
Sbjct: 10 DETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLG 68
Query: 100 IYGLITAIVLSGMLEKYSEP---FTSVSVKQQNWMAGYVMFGAGLAVGLV 146
IYGLI A+++S + ++P F + G AG+A+G+V
Sbjct: 69 IYGLIIAVIISTGINPKAKPYFLFDGYAHLSSGLACGLAGLAAGMAIGIV 118
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/28 (46%), Positives = 22/28 (78%)
Query: 172 FVKILIVEIFGSAIGLFGLIVGIYMTSK 199
FV ++++ IF A+ L+GLIVGI ++S+
Sbjct: 165 FVGMILILIFAEALALYGLIVGIILSSR 192
Score = 31.9 bits (69), Expect = 0.38
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 82 PRIKTKNLISVIFCEAVAIYGLITAIVLS 110
P++ ++ +IF EA+A+YGLI I+LS
Sbjct: 162 PKLFVGMILILIFAEALALYGLIVGIILS 190
>12_02_0364 -
18020249-18020737,18021075-18021502,18021563-18021649,
18022059-18022192,18023051-18023053,18023129-18023187,
18023429-18023887
Length = 552
Score = 36.7 bits (81), Expect = 0.013
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 4 FLSYLFVLLVGLAIPIFSLY----YVLNGKGEQISLGWFLENTSPYMWGTLGIAFSVALS 59
FLS L LL GL +P+ Y ++ K E+ S GW+L + G LG AFS+AL
Sbjct: 476 FLSSLAGLLGGLTLPVTFAYPCFMWICIKKPERFSSGWYLN----WGLGLLGTAFSLAL- 530
Query: 60 VVGAAMGIHTTGV 72
VG I ++G+
Sbjct: 531 CVGGVWSIISSGM 543
>11_04_0057 -
12953479-12954364,12954484-12955034,12955125-12955342,
12957514-12957678,12960562-12960898
Length = 718
Score = 27.9 bits (59), Expect = 6.1
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 50 LGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVL 109
+G++ S+A +V +A+ + V+ V GG++ T + + I GL A
Sbjct: 549 IGVSLSIASMLVASAVETYRRKVA-VKGGLQHDAKGTLEMSVLWLAPQYVIIGLAGAFSS 607
Query: 110 SGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLA 142
G +E Y + + +++ + FGAG+A
Sbjct: 608 IGQIEFY---YAVLPKSMGSFVLALLFFGAGVA 637
>04_04_0819 - 28312667-28313219,28315157-28316430
Length = 608
Score = 27.9 bits (59), Expect = 6.1
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 3 YFLSYLFVLLVGLA---IPIFSLYYVLNGKGEQISLGWFLENTSPYMW-----GTLGIAF 54
++L +L V++VGL +P F+ + L G + LG+ L G G+A
Sbjct: 337 WWLRWLLVMVVGLMAMLVPNFADFLSLVGSSVCVLLGFVLPAAFHLKVFGAEVGWPGLAG 396
Query: 55 SVALSVVGAAMGIHTTGVSI 74
VA+ VVG A+ + T S+
Sbjct: 397 DVAVIVVGTALAVSGTWTSL 416
>04_04_0197 + 23499527-23500603
Length = 358
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 34 SLGWFLENTSPYMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPR 83
S+ W + +P++ LG F V+ + AAMG + IV G + P+
Sbjct: 130 SINWRYDGNTPFVLWLLGFCFQVSKDQLMAAMG-GGSEKGIVSGTITHPK 178
>07_01_1035 +
8998266-8998349,8999394-8999441,8999714-8999792,
8999874-8999978,9000219-9000328,9000510-9000691,
9000909-9000978,9001066-9001239,9001373-9001477,
9001684-9001815,9002062-9002157,9002273-9002572
Length = 494
Score = 27.5 bits (58), Expect = 8.1
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 72 VSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGMLEKYSEPFTSVSVKQQNWM 131
VSI+GG A R+ + S+I + + LI + S K E S+ + +W+
Sbjct: 346 VSIIGGSSGAGRLIV--IASMILSFELP-FALIPLLKFSSSSNKMGENKNSIYIVGFSWV 402
Query: 132 AGYVMFGAGL 141
G+V+ G +
Sbjct: 403 LGFVIIGINI 412
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.327 0.143 0.429
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,821,022
Number of Sequences: 37544
Number of extensions: 166208
Number of successful extensions: 544
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 521
Number of HSP's gapped (non-prelim): 19
length of query: 205
length of database: 14,793,348
effective HSP length: 79
effective length of query: 126
effective length of database: 11,827,372
effective search space: 1490248872
effective search space used: 1490248872
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 58 (27.5 bits)
- SilkBase 1999-2023 -