GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000231-TA|BGIBMGA000231-PA|IPR002379|ATPase, F0/V0
complex, subunit C, IPR000245|ATPase, V0 complex, proteolipid subunit
C,
         (205 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ515150-1|CAD56157.2|  737|Anopheles gambiae acetylcholinestera...    24   3.7  
AJ515149-1|CAD56156.1|  737|Anopheles gambiae acetylcholinestera...    24   3.7  
AJ488492-1|CAD32684.2|  623|Anopheles gambiae acetylcholinestera...    24   3.7  
AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.           23   6.5  
CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          23   8.6  

>AJ515150-1|CAD56157.2|  737|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 737

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 15/40 (37%), Positives = 17/40 (42%)

Query: 47  WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKT 86
           WGTLGI     + VV  A    T   S+  G  K   I T
Sbjct: 441 WGTLGICEFPFVPVVDGAFLDETPQRSLASGRFKKTEILT 480


>AJ515149-1|CAD56156.1|  737|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 737

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 15/40 (37%), Positives = 17/40 (42%)

Query: 47  WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKT 86
           WGTLGI     + VV  A    T   S+  G  K   I T
Sbjct: 441 WGTLGICEFPFVPVVDGAFLDETPQRSLASGRFKKTEILT 480


>AJ488492-1|CAD32684.2|  623|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 623

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 15/40 (37%), Positives = 17/40 (42%)

Query: 47  WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKT 86
           WGTLGI     + VV  A    T   S+  G  K   I T
Sbjct: 327 WGTLGICEFPFVPVVDGAFLDETPQRSLASGRFKKTEILT 366


>AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.
          Length = 753

 Score = 23.0 bits (47), Expect = 6.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 53  AFSVALSVVGAAMGIHTTGVSIVGG 77
           A    +S VGA   +HTT +S   G
Sbjct: 666 AVVAGVSAVGAPRSMHTTSLSAAAG 690


>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 41  NTSPYMWGT-LGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAP 82
           N S   WG  +  A  + L+  GAA   +++  S  GGG  AP
Sbjct: 331 NGSHNAWGGFIQRAIPLPLNPTGAAGTTNSSANSGTGGGTAAP 373


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.327    0.143    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,308
Number of Sequences: 2123
Number of extensions: 5544
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 5
length of query: 205
length of database: 516,269
effective HSP length: 61
effective length of query: 144
effective length of database: 386,766
effective search space: 55694304
effective search space used: 55694304
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 46 (22.6 bits)