GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000231-TA|BGIBMGA000231-PA|IPR002379|ATPase, F0/V0
complex, subunit C, IPR000245|ATPase, V0 complex, proteolipid subunit
C,
         (205 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    84   1e-18
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.67 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   2.7  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          22   4.7  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   6.3  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 83.8 bits (198), Expect = 1e-18
 Identities = 50/153 (32%), Positives = 75/153 (49%), Gaps = 9/153 (5%)

Query: 47  WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 106
           +G +G A ++  S +GAA G   +G  I    V  P +  K++I V+    +AIYGL+ A
Sbjct: 13  FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 72

Query: 107 IVLSGMLEKYSEPFTSVSVKQQNWMAGYVMFGAGLAVGLVNLFCXXXXXXXXXXXXXXXX 166
           ++++G LE   EP      K      G+V  GAGLAVG   L                  
Sbjct: 73  VLIAGGLE---EP------KGYTLFKGFVHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTA 123

Query: 167 XXXXXFVKILIVEIFGSAIGLFGLIVGIYMTSK 199
                FV ++++ IF   +GL+GLIV IY+ +K
Sbjct: 124 QQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 156


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 37  WFLENTSPYMWGTLGIAFSVALSVVGA 63
           W  +   P+ WG +G+    A+ + GA
Sbjct: 553 WRFQPWGPFTWGGIGVVVLFAVVLAGA 579


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 9/49 (18%)

Query: 4   FLSYL-FVLLVGLAIPIFSLYYVLNG--------KGEQISLGWFLENTS 43
           F S+L F+LLV +A+ +++   V N         K ++I  G+FL + S
Sbjct: 84  FASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQEIFNGYFLNSES 132


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/19 (42%), Positives = 15/19 (78%), Gaps = 2/19 (10%)

Query: 4  FLSYLFVLLVGLAIPIFSL 22
          ++ +LFVL  GL +P+F++
Sbjct: 65 YIGFLFVL--GLIVPVFTI 81


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
          monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 9  FVLLVGLAIPIFSLYYVL 26
          F +L G+A+   +LYY L
Sbjct: 5  FEILCGIAVLFLALYYYL 22


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.143    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,086
Number of Sequences: 429
Number of extensions: 1485
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 5
length of query: 205
length of database: 140,377
effective HSP length: 55
effective length of query: 150
effective length of database: 116,782
effective search space: 17517300
effective search space used: 17517300
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 42 (21.0 bits)