Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000230-TA|BGIBMGA000230-PA|IPR013535|PUL
(294 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56375| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_29757| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40) 31 1.5
SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18) 30 1.9
SB_53106| Best HMM Match : PLAT (HMM E-Value=0) 29 4.5
SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017) 29 6.0
SB_53377| Best HMM Match : VRP1 (HMM E-Value=3.4) 28 7.9
SB_22463| Best HMM Match : VWA (HMM E-Value=0) 28 7.9
SB_41218| Best HMM Match : zf-C2H2 (HMM E-Value=0.68) 28 7.9
>SB_56375| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 47.6 bits (108), Expect = 1e-05
Identities = 51/182 (28%), Positives = 78/182 (42%), Gaps = 35/182 (19%)
Query: 28 PPPSSRDPFTGSGAYVTQAAISTEKPFVPHDSYIRFDQANIKAIYDKLREFNSKVGD--- 84
PP S+ DPFTG G+Y S P V ANI D + D
Sbjct: 89 PPGSACDPFTGGGSYRPSYG-SAGPPIV---------SANIGGAADPFTDILLVAADPAR 138
Query: 85 -GHNPLSDEQLQNVVKLGEL---ILFPVLDVTRLAVRNKQINAQMFDTKYGPNFVQYLLT 140
LS++QL + + + LFPVLD+ RL VR++ + A + GP+ V+ LL
Sbjct: 139 ASTQSLSEKQLLALNRARQWPADSLFPVLDIVRLVVRHQSLAANV----SGPDLVEQLLM 194
Query: 141 LLAPDNLPANIMLTMRVLVNAFSDLPGEMLVLAARETVMHSLIC-LTQLNNNTQVAACSL 199
+ + N FS G+ ++L RE ++ L+ L N N ++ C++
Sbjct: 195 ISG-------------IFANLFSSADGKAVILQYREKIIERLMSWLDCANKNVHISICTV 241
Query: 200 LL 201
L
Sbjct: 242 FL 243
>SB_29757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 41.1 bits (92), Expect = 0.001
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 18/98 (18%)
Query: 105 LFPVLDVTRLAVRNKQINAQMFDTKYGPNFVQYLLTLLAPDNLPANIMLTMRVLVNAFSD 164
LFPVLD+ RL VR++ + A + GP+ V+ LL + + N FS
Sbjct: 40 LFPVLDIVRLVVRHQSLAANV----SGPDLVEQLLMISG-------------IFANLFSS 82
Query: 165 LPGEMLVLAARETVMHSLIC-LTQLNNNTQVAACSLLL 201
G+ ++L RE ++ L+ L N N ++ C++ L
Sbjct: 83 ADGKAVILQYREKIIERLMSWLDCANKNVHISICTVFL 120
>SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)
Length = 2057
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/68 (26%), Positives = 31/68 (45%)
Query: 202 NLSVALAQQPDSVELAECVLQLLNKITDNEAYFRGLVALGTLLAESPNKIQLQSKIVSHT 261
+LS LA++ EL EC+ +L + + A R + N++ L+ + S
Sbjct: 967 SLSPGLAEEESFKELQECLPDILQRPNTSSANRRQSAGTKSKSLSFNNELDLRMRSTSDL 1026
Query: 262 QIHSRLKR 269
H R+KR
Sbjct: 1027 SAHPRIKR 1034
>SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)
Length = 2111
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 22 TAVPGLPPPSSRDPFTGSGAYVTQAAISTEKPFVPHDSYIRFDQ--ANIKAIYDKLREFN 79
TA +P S D SG Y+ +A + + V + +YI + N+ +YD++ FN
Sbjct: 71 TATYVIPSKISLDLNLTSGVYLLKARVFNDASSVQNQTYITVTERVQNVTWVYDRIATFN 130
Query: 80 SKV 82
+
Sbjct: 131 KTI 133
>SB_53106| Best HMM Match : PLAT (HMM E-Value=0)
Length = 1790
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 184 CLTQLNNNTQVAACSLLLNLSVALAQQPDSVELAEC 219
CL+ N+ + AA +L NLS + +E+A+C
Sbjct: 1224 CLSHQNDQVRFAAACVLRNLSSGTKSDQNKLEIADC 1259
>SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017)
Length = 1675
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 17 VPGSGTAVPGLPPPSSRDPFTGSGAYVTQAAISTEKPFVPHDSY 60
+P SG A+P +PP S PF T P +P S+
Sbjct: 1492 IPRSGHAMPDIPPKSHNSPFAVQVTQFTIPRSGHAMPDIPPKSH 1535
>SB_53377| Best HMM Match : VRP1 (HMM E-Value=3.4)
Length = 335
Score = 28.3 bits (60), Expect = 7.9
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 10 LTGESRYVPGSGTAVPGLPPPS-SRDPFTGSGAYVTQAAISTEKPFVPHDSYI 61
++ ES P TA P + PP+ S PFT S Y Q++ KP HDS +
Sbjct: 195 MSSESPIQPAVVTARPPIEPPTHSSAPFT-STPYTPQSSQVKSKP-ADHDSIL 245
>SB_22463| Best HMM Match : VWA (HMM E-Value=0)
Length = 1865
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 182 LICLTQLNNNTQVAACSLLLNLSVALAQQPDSVELAECVLQLLNKITDNE 231
LI T+ +T A C + ++++ A+ D E + V QL+N + D+E
Sbjct: 659 LIAATEAAADTICADCFVNMDIAFAIDTTGDVAETQKFVKQLVNNMADSE 708
>SB_41218| Best HMM Match : zf-C2H2 (HMM E-Value=0.68)
Length = 807
Score = 28.3 bits (60), Expect = 7.9
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 10 LTGESRYVPGSGTAVPGLPPPS-SRDPFTGSGAYVTQAAISTEKPFVPHDSYI 61
++ ES P TA P + PP+ S PFT S Y Q++ KP HDS +
Sbjct: 663 MSSESPIQPAVVTARPPIEPPTHSSAPFT-STPYTPQSSQVKSKP-ADHDSIL 713
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,391,019
Number of Sequences: 59808
Number of extensions: 367153
Number of successful extensions: 944
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 936
Number of HSP's gapped (non-prelim): 13
length of query: 294
length of database: 16,821,457
effective HSP length: 82
effective length of query: 212
effective length of database: 11,917,201
effective search space: 2526446612
effective search space used: 2526446612
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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