Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000230-TA|BGIBMGA000230-PA|IPR013535|PUL
(294 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 43 6e-05
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 29 0.60
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.79
SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1 |Schiz... 29 1.0
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 28 1.8
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 27 2.4
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 2.4
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 3.2
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 26 5.6
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 26 5.6
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 26 7.4
SPAC23G3.07c |snf30||SWI/SNF complex subunit Snf30|Schizosacchar... 26 7.4
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac... 25 9.8
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 25 9.8
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 9.8
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 42.7 bits (96), Expect = 6e-05
Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 13/173 (7%)
Query: 106 FPVLDVTRLAVRNKQINAQMFDTKYGPNFVQYLLTLLAPDNLPA-NIMLTMRVLVNAFSD 164
FP LD RL N + + F + + ++ + N + N+ML +R L N +
Sbjct: 531 FPALDALRLLAINSSSDLAPIFLEV---FSRVVKSVPSSGNFESINVMLALRGLSNVVPN 587
Query: 165 LPGEMLVLAARETVMHSLICLTQLNNNTQVAACSLLLNLSVALAQ---QPDSVELAECVL 221
+ V + + S + + ++A +L +NLS+ L Q + +EL +
Sbjct: 588 ITDAEGVSKLMDCLT-STVPQASSAKDFKIAFATLAMNLSILLIQLNLENTGIELLSILF 646
Query: 222 QLLNKIT-DNEAYFRGLVALGTLLAESPNKIQLQSKIVSHTQ--IHSRLKRDS 271
L+ + DNEA++R L+ALGT L P+ I L + + H Q +H +R S
Sbjct: 647 SFLDDPSPDNEAFYRALMALGT-LCTVPD-IALAASQIYHAQSIVHGIAERFS 697
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 29.5 bits (63), Expect = 0.60
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 7 ADPLTGESRY-VPGSGTAVPGLPPPSSRDPFTGSGAYVTQAAISTEKPFVPHDSYIRFD 64
A P + ++ Y P S PP S R+ GSG I +E PF H + FD
Sbjct: 46 ATPSSADAGYNAPSSTFESVRSPPESRREGGMGSGYQRDAIPIPSEPPFTAHVGNLSFD 104
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 0.79
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 9 PLTGESRYVPGSGTAVPGLPPPSSRDPFTGSGAYVTQAAISTEK-PFVPHDS 59
P E+ VP VP +PPPS+ P A + + T K P VP S
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPS 1243
>SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 49 STEKPFVPHDSYIRFDQANIKAIYDKLREFN 79
S K P D+++ F+ N + IY+ R FN
Sbjct: 224 SWAKKITPEDAHVNFESMNTQQIYNMSRAFN 254
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 27.9 bits (59), Expect = 1.8
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 168 EMLVLAARETVMHSLICLTQLNNNTQVAACSLLLNLSVALAQQPDSVELAECVLQLLNKI 227
EMLVL + + H L LT+ T +LLL + AQ+ D + LA+ + +++++
Sbjct: 1090 EMLVLLMNDGLKHDLDKLTEYAGRTFTTLKTLLLKDNDVEAQKLDHLFLAKLLFIIISQM 1149
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 27.5 bits (58), Expect = 2.4
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 23 AVPGLPPPSSRDPFTGSGAYVTQAAISTEKPFVPHDSYIRFDQANIKAI-YDKLREFN 79
A+P +P SS SGA+ A ++ + D YI F Q K + Y +E+N
Sbjct: 109 AIPSIPEESSSFMLLNSGAFSRLALFQKDELALLLDLYINFLQGLKKTVLYWLCKEYN 166
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 101 GELILFPVLDVTRLAVRNKQINAQMFDTKYGPNFVQYLLT 140
G+L++ +LD T+ + + +F+ YGP+F+ LLT
Sbjct: 983 GDLVVDAILD-TQNDLNPNSLEKILFEQTYGPSFICKLLT 1021
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 9 PLTGESRYVP-GSGTAVPGLPPPSSRDPFT 37
P GE+ + P SGT VP + PS +P+T
Sbjct: 929 PKVGETYHPPTASGTRVPPVQQPSHPNPYT 958
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 26.2 bits (55), Expect = 5.6
Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 3/104 (2%)
Query: 114 LAVRNKQINAQMFDTKYGPNFVQYLLTLLAPDNLPANIMLTMRVLVNAFSDLPGEMLVLA 173
L+V IN KY + + T + I+L VL+N S + G L
Sbjct: 427 LSVCTNLINEVASQNKYSSTEISQITTNREVEEENEEILL---VLLNIISSVIGRNAELD 483
Query: 174 ARETVMHSLICLTQLNNNTQVAACSLLLNLSVALAQQPDSVELA 217
+ L L QL+N + L ++ L Q D LA
Sbjct: 484 LENPISSLLPALEQLSNYSNREISDLAKDVYKTLIQSKDDYSLA 527
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 26.2 bits (55), Expect = 5.6
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 113 RLAVRNKQINAQMFDTKYGPNFV----QYLLTLLA-PDNLPANIMLTMRVLVNAFSDLPG 167
RLAV + + N ++FDT N++ + ++ A P+++P ++ R LV+ SD G
Sbjct: 587 RLAVASDEPNVRIFDTVSNRNWICSIPSHSDSIAAEPNSVPTSVQYKDRFLVDGKSD--G 644
Query: 168 EMLVLAA 174
+ V +A
Sbjct: 645 SVSVFSA 651
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/62 (22%), Positives = 27/62 (43%)
Query: 16 YVPGSGTAVPGLPPPSSRDPFTGSGAYVTQAAISTEKPFVPHDSYIRFDQANIKAIYDKL 75
Y G G++ GL RDP T A + + D + + D+++ AI++ +
Sbjct: 425 YTTGRGSSGVGLTAAVMRDPVTDEMVLEGGALVLADNGICCIDEFDKMDESDRTAIHEVM 484
Query: 76 RE 77
+
Sbjct: 485 EQ 486
>SPAC23G3.07c |snf30||SWI/SNF complex subunit
Snf30|Schizosaccharomyces pombe|chr 1|||Manual
Length = 274
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 87 NPLSDEQLQNVVKLGELILFPVLDVTRL-AVRNKQINAQMFDTKYGPNFVQYLLTLLA 143
NP+ E+ ++++ LIL+ L++ + +N + + T+ +++Q L LA
Sbjct: 21 NPMEVEKANKLLEINRLILWKCLELQHIKTAQNSTLEQRALSTELFNSYIQRLKANLA 78
>SPCC18B5.11c |cds1||replication checkpoint kinase
Cds1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 25.4 bits (53), Expect = 9.8
Identities = 16/80 (20%), Positives = 34/80 (42%)
Query: 199 LLLNLSVALAQQPDSVELAECVLQLLNKITDNEAYFRGLVALGTLLAESPNKIQLQSKIV 258
L ++ A + Q +EL + + +NE G+ + +L +P K +S+ +
Sbjct: 369 LTASIPFASSSQAKCIELISKGAYPIEPLLENEISEEGIDLINRMLEINPEKRISESEAL 428
Query: 259 SHTQIHSRLKRDSTTNPSDA 278
H ++ + T PS +
Sbjct: 429 QHPWFYTVSTHEHRTPPSSS 448
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.4 bits (53), Expect = 9.8
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 191 NTQVAACSLLLNLSVALAQQPDSVELAECVLQLLNKITDN-EAYFRG 236
NT + A S +LNL + D L ++Q+LN + N +Y G
Sbjct: 1115 NTILTALSTILNLKELECEPKDHANLILKIIQILNGLLFNHRSYMSG 1161
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 121 INAQMFDTKYGPNFVQYLLTLLAPDNLP-ANIMLT 154
+ A M T+Y P F + T + P LP AN+ T
Sbjct: 13 VTAVMAQTEYTPGFTTDVATTVTPTPLPSANVTTT 47
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,309,166
Number of Sequences: 5004
Number of extensions: 52144
Number of successful extensions: 178
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 162
Number of HSP's gapped (non-prelim): 24
length of query: 294
length of database: 2,362,478
effective HSP length: 72
effective length of query: 222
effective length of database: 2,002,190
effective search space: 444486180
effective search space used: 444486180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)
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