Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000230-TA|BGIBMGA000230-PA|IPR013535|PUL
(294 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0174 - 1227871-1228043,1228303-1228423,1228519-1228588,122... 45 6e-05
05_04_0022 - 17217626-17217643,17217740-17217856,17217987-172181... 32 0.48
09_04_0736 - 19815427-19815642,19815782-19816903,19817006-198177... 30 1.9
08_01_0053 + 365188-365376,365451-365729,365818-367341 30 1.9
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 29 3.4
06_01_0835 - 6315762-6316844 29 5.9
12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,167... 28 7.8
11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,172... 28 7.8
04_03_1002 - 21617339-21617362,21618476-21618565,21618755-216194... 28 7.8
>07_01_0174 -
1227871-1228043,1228303-1228423,1228519-1228588,
1228877-1228953,1229215-1229393,1229558-1229684,
1229849-1229861,1230351-1230378,1230426-1230516,
1230870-1230956,1231239-1231276,1231426-1231464,
1231553-1231699,1231899-1231958,1232033-1232111,
1232429-1232517,1232906-1232967,1233238-1233427,
1233929-1234068,1235813-1236147,1237086-1237133
Length = 730
Score = 45.2 bits (102), Expect = 6e-05
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 13/129 (10%)
Query: 27 LPPPSSRDPFTGSGAYV----TQAAISTEKP---FVPHDSYIRFDQANIKAIYDKLREFN 79
+P PS RDP+TG+ AYV + +S KP +P + + F+ A + I KL EFN
Sbjct: 372 VPDPSFRDPYTGANAYVPGQSASSTVSAPKPTFKHIPKNGMLTFETAQFEGILKKLSEFN 431
Query: 80 ----SKVGDGHNPLSDEQLQNVVKLGELILFPVLDVTRLAVRNKQINAQMFDTKYGPN-- 133
S + LS+ +L + + +++ T LA N ++ D P+
Sbjct: 432 ATLSSNLEQKELSLSEIELSRLAAIAKVLKETSFYHTILAYTNDVSRNKVQDLACNPSEI 491
Query: 134 FVQYLLTLL 142
FV L ++
Sbjct: 492 FVHLYLAVI 500
Score = 41.9 bits (94), Expect = 6e-04
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 8/129 (6%)
Query: 141 LLAPDNLPANIMLTMRVLVNAFSDLP--GEMLVLAARETVMHSLICLTQLNNNTQVAACS 198
++ P P N++ T++ + N F D P + L + E + C T + N +A +
Sbjct: 548 VVTPPVQPPNVLTTLKAVTNLF-DKPCLHQWLRIHGMEIIDSVSSCKTTFSKNAHLAYST 606
Query: 199 LLLNLSVALAQQPDSVELAECVLQLLNKITDN----EAYFRGLVALGTLLAESP-NKIQL 253
LLLN +V + D A+ + L D+ ++ +R LVA+G+L++ S + L
Sbjct: 607 LLLNYAVLSIESKDEQSQAQILSAALEIAEDDTQVADSKYRALVAIGSLVSFSMIHNTML 666
Query: 254 QSKIVSHTQ 262
+ VS Q
Sbjct: 667 STPSVSQLQ 675
>05_04_0022 -
17217626-17217643,17217740-17217856,17217987-17218112,
17218194-17218340,17218423-17218533,17218625-17218747,
17218827-17218958,17219157-17219252,17219532-17219653,
17219833-17220130,17220213-17220458,17220711-17220852,
17221068-17222105,17222183-17222262,17222558-17222800,
17222907-17222967,17224059-17224675
Length = 1238
Score = 32.3 bits (70), Expect = 0.48
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 132 PNFVQYLLTLLAPDNLPANIMLTMRVLVNAFSDLPGEMLVLAARETVMHSLI-CLTQLNN 190
P+ + L+ + +NL + L ++ +A + L E+ L +MH+L+ CL Q
Sbjct: 653 PHILSKLVDVAKNNNLEEGVALAAILVRSAANSLLQEIKKLGGI-AIMHTLMACLHQTEP 711
Query: 191 NTQVAACSLLLNLSVALAQQPDSVELAECVLQLLNKITDNE 231
+V A +LLL L + SV E + LL+ ++ E
Sbjct: 712 EHRVLAANLLLQLDMLDKPDGKSVFRDEAMEVLLDSLSSQE 752
>09_04_0736 -
19815427-19815642,19815782-19816903,19817006-19817707,
19817808-19817855,19817959-19818201,19819035-19819391
Length = 895
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 6 FADPLTGESRYVPGSGTAVPG--LPPPSSRDP-FTGSGAYVT 44
+ DP G SRY SG V G LP P S +P TG A T
Sbjct: 335 YFDPRRGRSRYFEYSGVPVSGGILPSPESGNPLLTGRSAQST 376
>08_01_0053 + 365188-365376,365451-365729,365818-367341
Length = 663
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 212 DSVELAECVLQLLNKITDNEAYFRGLVALGTLLAESPNKI-QLQSKIVSHTQIHSRLKRD 270
+SVE+ E +Q+ N T+ E + G+ LG+ + +S + + Q + Q+ +D
Sbjct: 432 ESVEIDELKVQMENSATECEQWKDGISVLGSEVIDSVEIVAKEQDSAIESEQLKDCEPKD 491
Query: 271 ST--TNPSDATLRKISICSQQVL 291
T T+ ++ + + + C++ VL
Sbjct: 492 GTKATDVTEVEVNEHTSCTESVL 514
>01_06_0124 - 26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 29.5 bits (63), Expect = 3.4
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 198 SLLLNLSVALAQQPDSVELAECV-LQLLNKITDNEAYFRGLVALGTLLAESPNKIQLQSK 256
SL L A+ + + E E V + +KI D E + LV LL+ NK++ K
Sbjct: 1138 SLNKQLEEAILKVSNLTEELETVQAETASKINDMETNTKDLVNTIVLLSSQKNKVEEHMK 1197
Query: 257 IVSHTQIH--SRLKRDSTTNPSDATLRKISI-CSQQVLR 292
I++ + S +K T R+I+I C QQ LR
Sbjct: 1198 IITEACMEKMSFMKDFEDQVKQKITDREIAIACLQQSLR 1236
>06_01_0835 - 6315762-6316844
Length = 360
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 5 SFADPLTGESRYVPGSGTAVPGLPPPSSRDPFTGS 39
S++ PL ES Y+P S + +PPP++ T S
Sbjct: 62 SYSSPLPQESYYLPASSSYAAIVPPPTTTTNTTTS 96
>12_01_0222 -
1675077-1675289,1675476-1675553,1675943-1676002,
1676103-1676206,1676321-1676479,1676768-1676894,
1677569-1677736,1677890-1678000,1678090-1678243,
1678409-1678744,1678854-1679038,1679141-1679239,
1679376-1679639,1679776-1679952,1680351-1680644,
1680753-1680920,1681574-1681918,1682002-1682171,
1682272-1682422,1683296-1683365,1683456-1683640,
1683999-1684092,1684195-1684313,1684658-1684717,
1684844-1684930,1685631-1685717,1685905-1686013,
1686105-1686183,1686350-1686437,1686611-1686675,
1687570-1687722,1688514-1688620,1688702-1688784,
1688926-1689016,1689095-1689231,1689612-1689701,
1689795-1689962,1690366-1690560
Length = 1809
Score = 28.3 bits (60), Expect = 7.8
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 167 GEMLVLAARETVMH-SLICLT-QLNNNTQVAACSLLLNLSVALAQQPDSVELAECVLQLL 224
G L A E + H L CL +N N+ AA +LN +A + + + +L L
Sbjct: 710 GSALASTAMEALGHIGLRCLLPSINRNSSQAALLTILNEKLAKLLSENDTKAKQKILISL 769
Query: 225 NKITDNEAYFRGL-VALGTLLAESPNKIQ 252
++ NE F L AL + + S +K++
Sbjct: 770 GHLSWNELSFAHLNNALDLIFSLSRSKVE 798
>11_01_0221 -
1720952-1721164,1721351-1721428,1721836-1721895,
1721996-1722099,1722214-1722372,1722668-1722794,
1723469-1723636,1723789-1723899,1723989-1724142,
1724308-1724643,1724753-1724937,1725040-1725138,
1725275-1725538,1725674-1725850,1726249-1726542,
1726649-1726816,1727473-1727817,1727901-1728070,
1728171-1728321,1729193-1729262,1729353-1729537,
1729896-1729989,1730094-1730212,1730558-1730617,
1730744-1730830,1732348-1732434,1732622-1732730,
1732822-1732900,1733067-1733154,1733328-1733392,
1734287-1734439,1735231-1735337,1735419-1735501,
1735643-1735733,1735812-1735948,1736118-1736207,
1736301-1736468,1736875-1737057
Length = 1805
Score = 28.3 bits (60), Expect = 7.8
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 167 GEMLVLAARETVMH-SLICLT-QLNNNTQVAACSLLLNLSVALAQQPDSVELAECVLQLL 224
G L A E + H L CL +N N+ AA +LN +A + + + +L L
Sbjct: 706 GSALASTAMEALGHIGLHCLLPSINRNSSQAALLTILNEKLAKLLSENDTKAIQKILISL 765
Query: 225 NKITDNEAYFRGL-VALGTLLAESPNKIQ 252
++ NE F L AL + + S +K++
Sbjct: 766 GHLSWNELSFAHLNNALDLIFSLSRSKVE 794
>04_03_1002 -
21617339-21617362,21618476-21618565,21618755-21619432,
21619536-21619772,21619849-21619896,21619995-21620045,
21620301-21620426,21620557-21620697,21621165-21621401,
21622467-21622571,21622812-21622982,21623306-21623380,
21623754-21623936,21624151-21624297,21624365-21624472,
21624605-21624709,21625109-21625213,21625322-21625381,
21625512-21625579,21625876-21625954,21626208-21626267,
21626445-21626498,21626834-21626886,21627405-21627494,
21628265-21628362,21628464-21628852
Length = 1193
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 193 QVAAC-SLLLNLSVALAQQPDSVELAECVLQLLNKITDNEAYFRGL 237
+VA C S L LS A PD ++ E + +L N+I + +++ R L
Sbjct: 751 EVALCTSSLKRLSEQAANNPDDSQIQEQIEKLKNEIDEKKSHIRVL 796
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,232,243
Number of Sequences: 37544
Number of extensions: 325061
Number of successful extensions: 1024
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1018
Number of HSP's gapped (non-prelim): 12
length of query: 294
length of database: 14,793,348
effective HSP length: 81
effective length of query: 213
effective length of database: 11,752,284
effective search space: 2503236492
effective search space used: 2503236492
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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