GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000230-TA|BGIBMGA000230-PA|IPR013535|PUL
         (294 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    28   0.086
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.46 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   4.3  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   5.6  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 28.3 bits (60), Expect = 0.086
 Identities = 12/33 (36%), Positives = 21/33 (63%)

Query: 59  SYIRFDQANIKAIYDKLREFNSKVGDGHNPLSD 91
           S+I    AN +++ +K+R+ N K  D HN +S+
Sbjct: 152 SFIDLFNANARSVVEKMRKENGKEFDCHNYMSE 184


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 12   GESRYVPGSGTAVPGLPPPSSRD 34
            G +R +P SG+  P  PPP + D
Sbjct: 1846 GSARNIPVSGSPEPPPPPPRNHD 1868


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 16  YVPGSGTAVPGLPP 29
           Y+PG+G  +P  PP
Sbjct: 419 YLPGNGVIIPDDPP 432


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 80  SKVGDGHNPLSDEQLQN 96
           +KVG G  PL +E+ +N
Sbjct: 332 TKVGSGEIPLEEEEWEN 348


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.134    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,205
Number of Sequences: 429
Number of extensions: 3181
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 294
length of database: 140,377
effective HSP length: 57
effective length of query: 237
effective length of database: 115,924
effective search space: 27473988
effective search space used: 27473988
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)