Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000230-TA|BGIBMGA000230-PA|IPR013535|PUL
(294 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18860.1 68416.m02395 transducin family protein / WD-40 repea... 67 2e-11
At3g18860.2 68416.m02396 transducin family protein / WD-40 repea... 66 3e-11
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos... 33 0.30
At3g56300.1 68416.m06258 tRNA synthetase class I (C) family prot... 33 0.30
At2g36010.3 68415.m04422 E2F transcription factor-3 (E2F3) ident... 33 0.30
At2g36010.2 68415.m04421 E2F transcription factor-3 (E2F3) ident... 33 0.30
At2g36010.1 68415.m04420 E2F transcription factor-3 (E2F3) ident... 33 0.30
At5g27970.1 68418.m03369 expressed protein 30 1.6
At5g10760.1 68418.m01250 aspartyl protease family protein contai... 30 1.6
At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot... 30 2.1
At5g18610.1 68418.m02203 protein kinase family protein contains ... 29 2.8
At1g70460.1 68414.m08107 protein kinase, putative contains Pfam ... 29 3.7
At5g55840.1 68418.m06958 pentatricopeptide (PPR) repeat-containi... 28 8.5
At5g23390.1 68418.m02736 expressed protein contains Pfam profile... 28 8.5
At2g24430.2 68415.m02920 no apical meristem (NAM) family protein... 28 8.5
At2g24430.1 68415.m02919 no apical meristem (NAM) family protein... 28 8.5
At1g63380.1 68414.m07166 short-chain dehydrogenase/reductase (SD... 28 8.5
>At3g18860.1 68416.m02395 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 66.9 bits (156), Expect = 2e-11
Identities = 72/268 (26%), Positives = 114/268 (42%), Gaps = 30/268 (11%)
Query: 5 SFADPLTGESRYVPGSGTAVPGLPPPSSRDPFTGSGAYVTQAAI--STEKPFVPHDSYIR 62
SF DP TG + YVPG + P G V AA K ++ +R
Sbjct: 457 SFRDPFTGANAYVPGQASRTAATPAKPLYKHIPKRGVLVFDAAQYDGILKKMTEFNTTLR 516
Query: 63 FDQANIKAIYDKLREFNSKVGDGHNPLSDEQLQNVVKLGEL---------------ILFP 107
D N +L S+VG N L D + ++ ++FP
Sbjct: 517 SDAVNNDKSLTELEV--SRVGAIVNILKDTSHYHSTNFADMDIALLLKVLQAWPPAMMFP 574
Query: 108 VLDVTRLAVRNKQINAQMFDTKYGPNFVQYLLTLL---APDN-LPANIMLTMRVLVNAFS 163
D+ R+ V + A + K+ N LL L+ D+ LPAN++ T+RVLVN F
Sbjct: 575 ATDIVRMLVLHHH-GASLL-IKHVENNNDLLLDLIKKVTEDSALPANLLTTVRVLVNLFK 632
Query: 164 DLPGEMLVLAARETVMHSLI-CLTQLNNNTQVAACSLLLNLSVALAQQPD---SVELAEC 219
+ + ++ + C + N N Q+A +LLLN +V L ++ D ++
Sbjct: 633 NSSFHYWLQTHHSQILDAFSNCYSSPNKNLQLAYSTLLLNYAVLLIEKKDQEGQAQVLSA 692
Query: 220 VLQLL-NKITDNEAYFRGLVALGTLLAE 246
LQ+ + D ++ FR LVA+G+L+ E
Sbjct: 693 ALQVAEEEAADVDSKFRSLVAIGSLMLE 720
Score = 39.5 bits (88), Expect = 0.003
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 30 PSSRDPFTGSGAYV----TQAAISTEKPF---VPHDSYIRFDQANIKAIYDKLREFNS 80
PS RDPFTG+ AYV ++ A + KP +P + FD A I K+ EFN+
Sbjct: 456 PSFRDPFTGANAYVPGQASRTAATPAKPLYKHIPKRGVLVFDAAQYDGILKKMTEFNT 513
>At3g18860.2 68416.m02396 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 66.1 bits (154), Expect = 3e-11
Identities = 72/268 (26%), Positives = 114/268 (42%), Gaps = 30/268 (11%)
Query: 5 SFADPLTGESRYVPGSGTAVPGLPPPSSRDPFTGSGAYVTQAAI--STEKPFVPHDSYIR 62
SF DP TG + YVPG + P G V AA K ++ +R
Sbjct: 457 SFRDPFTGANAYVPGQASRTAATPAKPLYKHIPKRGVLVFDAAQYDGILKKMTEFNTTLR 516
Query: 63 FDQANIKAIYDKLREFNSKVGDGHNPLSDEQLQNVVKLGEL---------------ILFP 107
D N +L S+VG N L D + ++ ++FP
Sbjct: 517 SDAVNNDKSLTELEV--SRVGAIVNILKDTSHYHSTNFADMDIALLLKVLQAWPPAMMFP 574
Query: 108 VLDVTRLAVRNKQINAQMFDTKYGPNFVQYLLTLL---APDN-LPANIMLTMRVLVNAFS 163
D+ R+ V + A + K+ N LL L+ D+ LPAN++ T+RVLVN F
Sbjct: 575 ATDIVRMLVLHHH-GASLL-IKHVENNNDLLLDLIKKVTEDSALPANLLTTVRVLVNLFK 632
Query: 164 DLPGEMLVLAARETVMHSLI-CLTQLNNNTQVAACSLLLNLSVALAQQPD---SVELAEC 219
+ + ++ + C + N N Q+A +LLLN +V L ++ D ++
Sbjct: 633 NSSFHYWLQTHHSQILDAFSNCYSSPNKNLQLAYSTLLLNYAVLLIEKKDQEGQAQVLSA 692
Query: 220 VLQL-LNKITDNEAYFRGLVALGTLLAE 246
LQ+ + D ++ FR LVA+G+L+ E
Sbjct: 693 ALQVPEEEAADVDSKFRSLVAIGSLMLE 720
Score = 39.5 bits (88), Expect = 0.003
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 30 PSSRDPFTGSGAYV----TQAAISTEKPF---VPHDSYIRFDQANIKAIYDKLREFNS 80
PS RDPFTG+ AYV ++ A + KP +P + FD A I K+ EFN+
Sbjct: 456 PSFRDPFTGANAYVPGQASRTAATPAKPLYKHIPKRGVLVFDAAQYDGILKKMTEFNT 513
>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
identical to CIP1 (GI:836950) [Arabidopsis thaliana]
Length = 1305
Score = 32.7 bits (71), Expect = 0.30
Identities = 24/96 (25%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Query: 200 LLNLSVAL-AQQPDSVELAECVLQLLNKITDNEAYFRGLVALGTLLAESPNKI-QLQSKI 257
+++LS +L A + + L+ +L++ +++ ++ + LV T LAES + + Q ++++
Sbjct: 501 VVDLSASLNAAEEEKKSLSSMILEITDELKQAQSKVQELV---TELAESKDTLTQKENEL 557
Query: 258 VSHTQIHSRLKRDSTTNPSDATLRKISICSQQVLRL 293
S ++H KRDS++ + R + +QV L
Sbjct: 558 SSFVEVHEAHKRDSSSQVKELEAR-VESAEEQVKEL 592
>At3g56300.1 68416.m06258 tRNA synthetase class I (C) family protein
similar to cysteinyl-tRNA synthetase [Methanococcus
maripaludis] GI:6599476; contains Pfam profile PF01406:
tRNA synthetases class I (C)
Length = 489
Score = 32.7 bits (71), Expect = 0.30
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 210 QPDSVELAECVLQLLNKITDNEAYFRGLVALGTLLAESPNKIQLQSKIVSHTQIHSRLKR 269
QP + E +++++ KI +N + + + +SP+ QL + + HTQ R+
Sbjct: 116 QPRVSDHMEQIIKMIEKIIENGCGYAVGGDVFFSVDKSPSYGQLSGQRLDHTQAGKRVAV 175
Query: 270 DS-TTNPSDATLRK 282
DS NP+D LRK
Sbjct: 176 DSRKRNPADFALRK 189
>At2g36010.3 68415.m04422 E2F transcription factor-3 (E2F3)
identical to E2F transcription factor-3 E2F3
[Arabidopsis thaliana] gi|10443853|gb|AAG17610
Length = 485
Score = 32.7 bits (71), Expect = 0.30
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 10 LTGESRYVPGSGTAVPGLP--PPSSRDPFTGSGAYVT----QAAISTEKPFVPHDSYIRF 63
++G R PGS P P PPSS P T + A ST+ PF P D Y RF
Sbjct: 1 MSGVVRSSPGSSQPPPPPPHHPPSSPVPVTSTPVIPPIRRHLAFASTKPPFHPSDDYHRF 60
Query: 64 DQANIKAIYDK 74
+ +++ D+
Sbjct: 61 NPSSLSNNNDR 71
>At2g36010.2 68415.m04421 E2F transcription factor-3 (E2F3)
identical to E2F transcription factor-3 E2F3
[Arabidopsis thaliana] gi|10443853|gb|AAG17610
Length = 514
Score = 32.7 bits (71), Expect = 0.30
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 10 LTGESRYVPGSGTAVPGLP--PPSSRDPFTGSGAYVT----QAAISTEKPFVPHDSYIRF 63
++G R PGS P P PPSS P T + A ST+ PF P D Y RF
Sbjct: 1 MSGVVRSSPGSSQPPPPPPHHPPSSPVPVTSTPVIPPIRRHLAFASTKPPFHPSDDYHRF 60
Query: 64 DQANIKAIYDK 74
+ +++ D+
Sbjct: 61 NPSSLSNNNDR 71
>At2g36010.1 68415.m04420 E2F transcription factor-3 (E2F3)
identical to E2F transcription factor-3 E2F3
[Arabidopsis thaliana] gi|10443853|gb|AAG17610
Length = 483
Score = 32.7 bits (71), Expect = 0.30
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 10 LTGESRYVPGSGTAVPGLP--PPSSRDPFTGSGAYVT----QAAISTEKPFVPHDSYIRF 63
++G R PGS P P PPSS P T + A ST+ PF P D Y RF
Sbjct: 1 MSGVVRSSPGSSQPPPPPPHHPPSSPVPVTSTPVIPPIRRHLAFASTKPPFHPSDDYHRF 60
Query: 64 DQANIKAIYDK 74
+ +++ D+
Sbjct: 61 NPSSLSNNNDR 71
>At5g27970.1 68418.m03369 expressed protein
Length = 1629
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 89 LSDEQLQNVVKLGELILFPVLDVTRLAVRNKQINAQMFDTKYG--PNFVQYLLTLLAPDN 146
L + +Q+ + + +L + LA++ IN++ F+T+YG P ++++L +L
Sbjct: 1182 LGELYVQSSKMFDDKMYMQLLGIVDLAIKQAIINSENFETEYGHVPPVLRHVLEILPSLG 1241
Query: 147 LPANIMLTMRVLVNAF 162
P ++ +L+ F
Sbjct: 1242 PPEHLSSMWLILLREF 1257
>At5g10760.1 68418.m01250 aspartyl protease family protein contains
Pfam domain, PF00026: eukaryotic aspartyl protease
Length = 464
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 14 SRYVPGSGTAVPGLPPPSSRDPFTGSGAYVTQAAISTEKPFVPHDSYIRFDQANIKAIYD 73
S P S + VP +++ + + +S++ V HD IR DQA +++IY
Sbjct: 43 SSLFPSSSSCVPSSKASNTKSSLRVVHMHGACSHLSSDAR-VDHDEIIRRDQARVESIYS 101
Query: 74 KL 75
KL
Sbjct: 102 KL 103
>At5g38830.1 68418.m04697 tRNA synthetase class I (C) family protein
similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC
6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus
subtilis}; contains Pfam profile PF01406: tRNA
synthetases class I (C)
Length = 511
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 210 QPDSVELAECVLQLLNKITDNEAYFRGLVALGTL---LAESPNKIQLQSKIVSHTQIHSR 266
QP E + +++++ KI + + G V G + + +SPN +L +++ HT+ R
Sbjct: 117 QPRVSEHMDNIIKMIEKIIEKDC---GYVVEGDVFFSVDKSPNYGKLSGQLLEHTRAGER 173
Query: 267 LKRDS-TTNPSDATLRK 282
+ DS NP+D L K
Sbjct: 174 VAVDSRKRNPADFALWK 190
>At5g18610.1 68418.m02203 protein kinase family protein contains
eukaryotic protein kinase domain, PROSITE:PS00107
Length = 513
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 64 DQANIKAIYDKLREFNSKVGDGHNP-LSDEQLQNVVKLGE 102
D+AN IY L+ N +GDG++P LSD L + +G+
Sbjct: 200 DKANPPVIYRDLKSSNILLGDGYHPKLSDFGLAKLGPVGD 239
>At1g70460.1 68414.m08107 protein kinase, putative contains Pfam
PF00069: Protein kinase domain
Length = 710
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 9 PLTGESRYVPGSGTAVPGLPPPSSRDPFTG 38
PLT SR VP SG +VP PP +S + G
Sbjct: 206 PLTSPSRGVPSSGNSVP--PPANSGGGYQG 233
>At5g55840.1 68418.m06958 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 1274
Score = 27.9 bits (59), Expect = 8.5
Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 6/132 (4%)
Query: 54 FVPHDSYIRFDQANIKAIYDKLREFNSKVGDGHNPLSDEQLQNVVKLGELILFPVLDVTR 113
F+ S + N+K +KL+ + + H D Q NV+ +L LF L +
Sbjct: 1066 FITSMSLSQDSHRNLKMAMEKLKALQNDIAVCHREELDLQ-SNVLSKNQLKLFE-LCLIH 1123
Query: 114 LAVRNKQINAQMFDTKYGPNFVQYLLTLLAPDNLPANIMLTMRVLVNAFSDLPGEMLVLA 173
++ R+ + K TLLAP + N T + + LPG ++
Sbjct: 1124 ISSRSLSLYCYTEQDKQDSEGA----TLLAPFSDKYNSKTTPKESLIESLKLPGGLINAV 1179
Query: 174 ARETVMHSLICL 185
T + L+CL
Sbjct: 1180 FNSTCIKDLVCL 1191
>At5g23390.1 68418.m02736 expressed protein contains Pfam profile:
PF04842 plant protein of unknown function (DUF639)
Length = 730
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 191 NTQVAACSLLLNLSVALAQQPDSVELAECVLQLL 224
N+ V+ CS +LN+ Q VEL E V QLL
Sbjct: 62 NSVVSRCSKILNIQTEDLQHHFDVELPESVKQLL 95
>At2g24430.2 68415.m02920 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
Length = 316
Score = 27.9 bits (59), Expect = 8.5
Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 3/102 (2%)
Query: 118 NKQINAQMFDTKYG-PNFVQYLLTLLAPDNLPANIMLTMRVLVNAFSDLPGEMLVLAARE 176
N A + T PN+ LL L ++ + ++ NA + A+
Sbjct: 185 NNHTRASILSTNNNNPNYSSDLLQLPPHLQPHPSLNINQSLMANAVHLAELSRVFRASTS 244
Query: 177 TVMHSLICLTQLNNNTQVAACSLLLNLSVALAQQPDSVELAE 218
T M S QL N T + L LNL AL Q P V L +
Sbjct: 245 TTMDS--SHQQLMNYTHMPVSGLNLNLGGALVQPPPVVSLED 284
>At2g24430.1 68415.m02919 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
Length = 316
Score = 27.9 bits (59), Expect = 8.5
Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 3/102 (2%)
Query: 118 NKQINAQMFDTKYG-PNFVQYLLTLLAPDNLPANIMLTMRVLVNAFSDLPGEMLVLAARE 176
N A + T PN+ LL L ++ + ++ NA + A+
Sbjct: 185 NNHTRASILSTNNNNPNYSSDLLQLPPHLQPHPSLNINQSLMANAVHLAELSRVFRASTS 244
Query: 177 TVMHSLICLTQLNNNTQVAACSLLLNLSVALAQQPDSVELAE 218
T M S QL N T + L LNL AL Q P V L +
Sbjct: 245 TTMDS--SHQQLMNYTHMPVSGLNLNLGGALVQPPPVVSLED 284
>At1g63380.1 68414.m07166 short-chain dehydrogenase/reductase (SDR)
family protein contains similarity to
3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
from [Bacillus subtilis]
Length = 287
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 3 VHSFADPLTGESRYVPGSGTAVPGLPPPSSRDP 35
+H + +TG + Y+ SGT +PG+P SS P
Sbjct: 256 IHDSSQYVTGNT-YIVDSGTTLPGVPIFSSLSP 287
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,618,333
Number of Sequences: 28952
Number of extensions: 257744
Number of successful extensions: 754
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 736
Number of HSP's gapped (non-prelim): 25
length of query: 294
length of database: 12,070,560
effective HSP length: 81
effective length of query: 213
effective length of database: 9,725,448
effective search space: 2071520424
effective search space used: 2071520424
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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