Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000229-TA|BGIBMGA000229-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like
         (337 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    26   0.40 
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    25   0.71 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    25   0.71 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   0.71 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   8.7  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1
          alpha protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 41 LWHPEGVKEFVNVITYKGHRNFV 63
          LW  E  K +V +I   GHR+F+
Sbjct: 77 LWKFETAKYYVTIIDAPGHRDFI 99


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
          1-alpha protein.
          Length = 172

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 41 LWHPEGVKEFVNVITYKGHRNFV 63
          LW  E  K +V +I   GHR+F+
Sbjct: 4  LWKFETSKYYVTIIDAPGHRDFI 26


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
          1-alpha protein.
          Length = 274

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 41 LWHPEGVKEFVNVITYKGHRNFV 63
          LW  E  K +V +I   GHR+F+
Sbjct: 20 LWKFETSKYYVTIIDAPGHRDFI 42


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation
          factor-1alpha F2 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 41 LWHPEGVKEFVNVITYKGHRNFV 63
          LW  E  K +V +I   GHR+F+
Sbjct: 77 LWKFETSKYYVTIIDAPGHRDFI 99


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/27 (25%), Positives = 14/27 (51%)

Query: 250 VKCYSWSVAENTWNEIGDVMGANPASE 276
           +K  +W +  NTW  I +++  +   E
Sbjct: 263 IKWKNWDLKYNTWEPISNLINCSDILE 289


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,938
Number of Sequences: 429
Number of extensions: 4373
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 5
length of query: 337
length of database: 140,377
effective HSP length: 58
effective length of query: 279
effective length of database: 115,495
effective search space: 32223105
effective search space used: 32223105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)