GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000229-TA|BGIBMGA000229-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like
         (337 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   3.2  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    23   4.2  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    23   4.2  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   5.5  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 184 RVFTKDPAR-FADEETIKNFEEEVEKIQASSEQEI 217
           RV  K  A  F DE+  +N   ++ KI + ++QEI
Sbjct: 502 RVGNKGKATSFFDEDQDRNLASDLAKILSQAKQEI 536


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 45  EGVKEFVNVITYKGHRNFVSCICW 68
           EG++E V+   ++GH      IC+
Sbjct: 286 EGIREEVDTFMFEGHDTTSVSICY 309


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 45  EGVKEFVNVITYKGHRNFVSCICW 68
           EG++E V+   ++GH      IC+
Sbjct: 286 EGIREEVDTFMFEGHDTTSVSICY 309


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 3/40 (7%)

Query: 228 PEVLLEPGKSDGQTKLVRRGAAVKCYS---WSVAENTWNE 264
           PE+ ++  +    T L+  G+ V C S   WS    T N+
Sbjct: 88  PEIKIQISQQQSVTALLDTGSEVSCISEEVWSKLIETGNK 127


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,639
Number of Sequences: 317
Number of extensions: 3561
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 337
length of database: 114,650
effective HSP length: 57
effective length of query: 280
effective length of database: 96,581
effective search space: 27042680
effective search space used: 27042680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)