GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000229-TA|BGIBMGA000229-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like
         (337 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ821850-1|CAH25390.1|  426|Anopheles gambiae alpha-2,6-sialyltr...    27   0.57 
AY341205-1|AAR13769.1|  285|Anopheles gambiae period protein.          25   3.0  
AY341204-1|AAR13768.1|  285|Anopheles gambiae period protein.          25   3.0  
AY341203-1|AAR13767.1|  285|Anopheles gambiae period protein.          25   3.0  
AY341202-1|AAR13766.1|  285|Anopheles gambiae period protein.          25   3.0  

>AJ821850-1|CAH25390.1|  426|Anopheles gambiae
           alpha-2,6-sialyltransferase protein.
          Length = 426

 Score = 27.5 bits (58), Expect = 0.57
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 248 AAVKCYSWSVAENTWNEIGDVMGANP 273
           A V+  SW     TWNEIG  +  +P
Sbjct: 168 ANVRVLSWKEPPFTWNEIGSYLPTSP 193


>AY341205-1|AAR13769.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 132 QNGFATSGEGGSVRLWTGGDCIREIRLPVQSVWSVTCLENGDIVTGSSDG 181
           Q GF+ SG GGS    + G+   E    + S  + T    G   TG+S G
Sbjct: 215 QRGFSASGGGGSG--GSAGNFSSESNAQMDSTTNTTSNTGGTGGTGTSSG 262


>AY341204-1|AAR13768.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 132 QNGFATSGEGGSVRLWTGGDCIREIRLPVQSVWSVTCLENGDIVTGSSDG 181
           Q GF+ SG GGS    + G+   E    + S  + T    G   TG+S G
Sbjct: 215 QRGFSASGGGGSG--GSAGNFSSESNAQMDSTTNTTSNTGGTGGTGTSSG 262


>AY341203-1|AAR13767.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 132 QNGFATSGEGGSVRLWTGGDCIREIRLPVQSVWSVTCLENGDIVTGSSDG 181
           Q GF+ SG GGS    + G+   E    + S  + T    G   TG+S G
Sbjct: 215 QRGFSASGGGGSG--GSAGNFSSESNAQMDSTTNTTSNTGGTGGTGTSSG 262


>AY341202-1|AAR13766.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 132 QNGFATSGEGGSVRLWTGGDCIREIRLPVQSVWSVTCLENGDIVTGSSDG 181
           Q GF+ SG GGS    + G+   E    + S  + T    G   TG+S G
Sbjct: 215 QRGFSASGGGGSG--GSAGNFSSESNAQMDSTTNTTSNTGGTGGTGTSSG 262


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 367,872
Number of Sequences: 2123
Number of extensions: 16374
Number of successful extensions: 30
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 5
length of query: 337
length of database: 516,269
effective HSP length: 64
effective length of query: 273
effective length of database: 380,397
effective search space: 103848381
effective search space used: 103848381
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)