Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000229-TA|BGIBMGA000229-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like
(337 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18860.2 68416.m02396 transducin family protein / WD-40 repea... 167 7e-42
At3g18860.1 68416.m02395 transducin family protein / WD-40 repea... 167 7e-42
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 69 4e-12
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 63 3e-10
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 63 3e-10
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 59 4e-09
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 58 6e-09
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 49 5e-06
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 48 9e-06
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 46 3e-05
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 45 8e-05
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 44 1e-04
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 44 1e-04
At1g24530.1 68414.m03088 transducin family protein / WD-40 repea... 44 1e-04
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 44 2e-04
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 44 2e-04
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 44 2e-04
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 43 3e-04
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 43 3e-04
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 43 3e-04
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 43 3e-04
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 42 4e-04
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 42 6e-04
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 42 8e-04
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 41 0.001
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 41 0.001
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 40 0.002
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea... 40 0.002
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 40 0.002
At4g03020.1 68417.m00410 transducin family protein / WD-40 repea... 40 0.002
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 40 0.002
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 40 0.003
At5g52250.1 68418.m06485 transducin family protein / WD-40 repea... 39 0.004
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 39 0.004
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 39 0.005
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 38 0.007
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 38 0.013
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 38 0.013
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 38 0.013
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 37 0.017
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 37 0.017
At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 ... 37 0.017
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 37 0.017
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 37 0.022
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 37 0.022
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf... 36 0.029
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 36 0.029
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 36 0.029
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 36 0.039
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 36 0.039
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 36 0.039
At3g01340.1 68416.m00051 protein transport protein SEC13 family ... 36 0.039
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf... 36 0.051
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ... 36 0.051
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 36 0.051
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 36 0.051
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 36 0.051
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 36 0.051
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 36 0.051
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 36 0.051
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea... 36 0.051
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 36 0.051
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 35 0.068
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 35 0.068
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 35 0.068
At5g50120.1 68418.m06207 transducin family protein / WD-40 repea... 35 0.089
At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1) ide... 35 0.089
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf... 35 0.089
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf... 35 0.089
At2g30050.1 68415.m03654 transducin family protein / WD-40 repea... 34 0.12
At1g49450.1 68414.m05543 transducin family protein / WD-40 repea... 34 0.12
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 34 0.16
At4g01860.2 68417.m00244 transducin family protein / WD-40 repea... 34 0.16
At4g01860.1 68417.m00243 transducin family protein / WD-40 repea... 34 0.16
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 34 0.16
At3g18950.1 68416.m02405 transducin family protein / WD-40 repea... 34 0.16
At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochro... 34 0.16
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 34 0.16
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 34 0.16
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 34 0.16
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea... 34 0.16
At5g58230.1 68418.m07290 WD-40 repeat protein (MSI1) contains 6 ... 33 0.21
At5g23730.1 68418.m02782 transducin family protein / WD-40 repea... 33 0.21
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 33 0.21
At3g45140.1 68416.m04872 lipoxygenase (LOX2) identical to SP|P38418 33 0.36
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 33 0.36
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 33 0.36
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 32 0.48
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 32 0.48
At4g21130.1 68417.m03055 transducin family protein / WD-40 repea... 32 0.48
At1g03110.1 68414.m00288 transducin family protein / WD-40 repea... 32 0.48
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 32 0.63
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 32 0.63
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 32 0.63
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 31 0.83
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf... 31 0.83
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf... 31 0.83
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea... 31 0.83
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea... 31 0.83
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 31 0.83
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 31 0.83
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 31 0.83
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro... 31 1.1
At2g26490.1 68415.m03178 transducin family protein / WD-40 repea... 31 1.1
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 31 1.1
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 31 1.1
At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochro... 31 1.1
At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochro... 31 1.1
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 31 1.5
At4g33500.1 68417.m04758 protein phosphatase 2C-related / PP2C-r... 31 1.5
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 31 1.5
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 31 1.5
At1g47610.1 68414.m05288 transducin family protein / WD-40 repea... 31 1.5
At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si... 30 1.9
At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10... 30 1.9
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 30 1.9
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 30 1.9
At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 ... 30 2.5
At4g31160.1 68417.m04423 transducin family protein / WD-40 repea... 30 2.5
At3g12650.1 68416.m01575 expressed protein 30 2.5
At4g16050.1 68417.m02435 expressed protein 29 3.4
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 29 3.4
At4g07410.1 68417.m01136 transducin family protein / WD-40 repea... 29 3.4
At2g31300.1 68415.m03821 transducin family protein / WD-40 repea... 29 3.4
At2g30910.2 68415.m03768 transducin family protein / WD-40 repea... 29 3.4
At2g30910.1 68415.m03767 transducin family protein / WD-40 repea... 29 3.4
At4g34380.1 68417.m04884 transducin family protein / WD-40 repea... 29 4.4
At4g32190.1 68417.m04581 centromeric protein-related low similar... 29 4.4
At3g51930.1 68416.m05696 transducin family protein / WD-40 repea... 29 4.4
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 29 5.9
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 29 5.9
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 29 5.9
At4g00090.1 68417.m00009 transducin family protein / WD-40 repea... 29 5.9
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea... 29 5.9
At2g43700.1 68415.m05432 lectin protein kinase family protein co... 29 5.9
At1g52730.2 68414.m05959 transducin family protein / WD-40 repea... 29 5.9
At1g52730.1 68414.m05958 transducin family protein / WD-40 repea... 29 5.9
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 28 7.8
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 28 7.8
At3g55060.1 68416.m06115 expressed protein contains weak similar... 28 7.8
At3g50390.1 68416.m05512 transducin family protein / WD-40 repea... 28 7.8
>At3g18860.2 68416.m02396 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 167 bits (407), Expect = 7e-42
Identities = 103/307 (33%), Positives = 165/307 (53%), Gaps = 28/307 (9%)
Query: 13 NGHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPPC 72
+ H +++V ++S S D + KLW K ++ T GH + V + V P
Sbjct: 148 DAHQSPIQAVIRLPSGELVSGSSDASLKLW-----KGKTSLQTLSGHTDTVRGLA-VMPD 201
Query: 73 VSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISINPAVQ 132
+ F ++ S+D +I + L G VLL + GH + V SV SG+++S S
Sbjct: 202 LGF-----LSASHDGSIRLWALS-GEVLLEMVGHTSLVYSVD-AHSSGLIVSAS------ 248
Query: 133 NGFATSGEGGSVRLWTGGDCIREIRLPVQSVWSVTCLENGDIVTGSSDGVIRVFTKDPAR 192
E ++W G C++ + P +W LE GDIVT SDGV+RV+T
Sbjct: 249 -------EDRHAKIWKDGVCVQSLEHP-GCIWDAKFLETGDIVTACSDGVVRVWTVRHDA 300
Query: 193 FADEETIKNFEEEVEKIQASSEQEIGGFKVSELPGPEVLLEPGKSDGQTKLVRRGAAVKC 252
AD+ I ++ ++ + + S +++GG K+ ELPG + L PG SDGQTK+VR G
Sbjct: 301 IADQMEIDAYDSQISQYKLS-RKKVGGLKLDELPGLDSLTSPGTSDGQTKVVREGDNGVA 359
Query: 253 YSWSVAENTWNEIGDVMGANPASEGKTMYQGKEYDFVFSVDIKDGAPPIKLPYNKTEDPW 312
Y+W++ E W++IG+V+ + +++G +YDFVF VDI DG P KLPYN++++P+
Sbjct: 360 YAWNMKEQRWDKIGEVVDGPDGVADRPIHEGVQYDFVFDVDIGDGEPIRKLPYNRSDNPY 419
Query: 313 AAAQAFI 319
AA ++
Sbjct: 420 DAADKWL 426
Score = 93.1 bits (221), Expect = 2e-19
Identities = 53/184 (28%), Positives = 97/184 (52%), Gaps = 17/184 (9%)
Query: 5 DYKLSAILNGHSMDVRSVAATKEFCILSASRDRTAKLWH--PEGVKEFVNVITYKGHRNF 62
+YKL L+GH DVR + + I ++SRDRT ++W P +++ + GH +F
Sbjct: 9 EYKLRCELHGHDDDVRGICVCNDENIATSSRDRTIRVWSLDPSDKRKYTSEKILLGHTSF 68
Query: 63 VSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGIL 122
V + W+PP +PEG +V+GS D + +NL +G + TL+GH+ V V+ D+ +
Sbjct: 69 VGPLAWIPPTDEYPEGRLVSGSMDTFVFVWNLMNGENIQTLKGHQMQVTGVA--IDNEDI 126
Query: 123 LSISINPAVQNGFATSGEGGSVRLWTGGDCIREIRLPVQSVWSVTCLENGDIVTGSSDGV 182
+S S++ +++ W G + + +V L +G++V+GSSD
Sbjct: 127 VSSSVDQ-------------TLKRWRNGQLVESWDAHQSPIQAVIRLPSGELVSGSSDAS 173
Query: 183 IRVF 186
++++
Sbjct: 174 LKLW 177
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 12 LNGHSMDVRSVAATKEFCILSASRDRTAKLWHPEG 46
L+GH+ VR +A + LSAS D + +LW G
Sbjct: 186 LSGHTDTVRGLAVMPDLGFLSASHDGSIRLWALSG 220
>At3g18860.1 68416.m02395 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 167 bits (407), Expect = 7e-42
Identities = 103/307 (33%), Positives = 165/307 (53%), Gaps = 28/307 (9%)
Query: 13 NGHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPPC 72
+ H +++V ++S S D + KLW K ++ T GH + V + V P
Sbjct: 148 DAHQSPIQAVIRLPSGELVSGSSDASLKLW-----KGKTSLQTLSGHTDTVRGLA-VMPD 201
Query: 73 VSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISINPAVQ 132
+ F ++ S+D +I + L G VLL + GH + V SV SG+++S S
Sbjct: 202 LGF-----LSASHDGSIRLWALS-GEVLLEMVGHTSLVYSVD-AHSSGLIVSAS------ 248
Query: 133 NGFATSGEGGSVRLWTGGDCIREIRLPVQSVWSVTCLENGDIVTGSSDGVIRVFTKDPAR 192
E ++W G C++ + P +W LE GDIVT SDGV+RV+T
Sbjct: 249 -------EDRHAKIWKDGVCVQSLEHP-GCIWDAKFLETGDIVTACSDGVVRVWTVRHDA 300
Query: 193 FADEETIKNFEEEVEKIQASSEQEIGGFKVSELPGPEVLLEPGKSDGQTKLVRRGAAVKC 252
AD+ I ++ ++ + + S +++GG K+ ELPG + L PG SDGQTK+VR G
Sbjct: 301 IADQMEIDAYDSQISQYKLS-RKKVGGLKLDELPGLDSLTSPGTSDGQTKVVREGDNGVA 359
Query: 253 YSWSVAENTWNEIGDVMGANPASEGKTMYQGKEYDFVFSVDIKDGAPPIKLPYNKTEDPW 312
Y+W++ E W++IG+V+ + +++G +YDFVF VDI DG P KLPYN++++P+
Sbjct: 360 YAWNMKEQRWDKIGEVVDGPDGVADRPIHEGVQYDFVFDVDIGDGEPIRKLPYNRSDNPY 419
Query: 313 AAAQAFI 319
AA ++
Sbjct: 420 DAADKWL 426
Score = 93.1 bits (221), Expect = 2e-19
Identities = 53/184 (28%), Positives = 97/184 (52%), Gaps = 17/184 (9%)
Query: 5 DYKLSAILNGHSMDVRSVAATKEFCILSASRDRTAKLWH--PEGVKEFVNVITYKGHRNF 62
+YKL L+GH DVR + + I ++SRDRT ++W P +++ + GH +F
Sbjct: 9 EYKLRCELHGHDDDVRGICVCNDENIATSSRDRTIRVWSLDPSDKRKYTSEKILLGHTSF 68
Query: 63 VSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGIL 122
V + W+PP +PEG +V+GS D + +NL +G + TL+GH+ V V+ D+ +
Sbjct: 69 VGPLAWIPPTDEYPEGRLVSGSMDTFVFVWNLMNGENIQTLKGHQMQVTGVA--IDNEDI 126
Query: 123 LSISINPAVQNGFATSGEGGSVRLWTGGDCIREIRLPVQSVWSVTCLENGDIVTGSSDGV 182
+S S++ +++ W G + + +V L +G++V+GSSD
Sbjct: 127 VSSSVDQ-------------TLKRWRNGQLVESWDAHQSPIQAVIRLPSGELVSGSSDAS 173
Query: 183 IRVF 186
++++
Sbjct: 174 LKLW 177
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 12 LNGHSMDVRSVAATKEFCILSASRDRTAKLWHPEG 46
L+GH+ VR +A + LSAS D + +LW G
Sbjct: 186 LSGHTDTVRGLAVMPDLGFLSASHDGSIRLWALSG 220
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 68.9 bits (161), Expect = 4e-12
Identities = 60/214 (28%), Positives = 98/214 (45%), Gaps = 29/214 (13%)
Query: 7 KLSAILNGHSMDVRSVA-ATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSC 65
K +++ H D+ SVA A + + + S DRTA +W + + V+V+T KGH+ +
Sbjct: 490 KTRSVVAAHDKDINSVAVARNDSLVCTGSEDRTASIWR---LPDLVHVVTLKGHKRRIFS 546
Query: 66 ICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSI 125
+ + S + V+T S D T+ + + DG+ L T EGH S +L +
Sbjct: 547 VEF-----STVDQCVMTASGDKTVKIWAISDGSCLKTFEGH-----------TSSVLRAS 590
Query: 126 SINPAVQNGFATSGEGGSVRLW--TGGDCIREIRLPVQSVWSVTCLENGD-IVTGSSDGV 182
I Q F + G G ++LW +CI VW++ + + I TG D V
Sbjct: 591 FITDGTQ--FVSCGADGLLKLWNVNTSECIATYDQHEDKVWALAVGKKTEMIATGGGDAV 648
Query: 183 IRVFTKDPARFADEETIKNFEEEVEKIQASSEQE 216
I ++ A +D+E +F +E E I E E
Sbjct: 649 INLWHDSTA--SDKE--DDFRKEEEAILRGQELE 678
Score = 48.8 bits (111), Expect = 5e-06
Identities = 52/210 (24%), Positives = 99/210 (47%), Gaps = 35/210 (16%)
Query: 14 GHSMDVRSVA-ATKEFCI-LSASRDRTAKLWHPEGV----KEFVNVIT---YKGHRNFVS 64
GH+ D+ +VA A K F +S S DRT K+W +G+ +E +N+ T H ++
Sbjct: 444 GHNGDILAVAFAKKSFSFFVSGSGDRTLKVWSLDGISEDSEEPINLKTRSVVAAHDKDIN 503
Query: 65 CICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLS 124
+ V+ + LV TGS D T + L D ++TL+GH+ + S
Sbjct: 504 SV-----AVARNDSLVCTGSEDRTASIWRLPDLVHVVTLKGHKRRI------------FS 546
Query: 125 ISINPAVQNGFATSGEGGSVRLW--TGGDCIREIRLPVQSVWSVTCLENG-DIVTGSSDG 181
+ + Q SG+ +V++W + G C++ SV + + +G V+ +DG
Sbjct: 547 VEFSTVDQCVMTASGD-KTVKIWAISDGSCLKTFEGHTSSVLRASFITDGTQFVSCGADG 605
Query: 182 VIRVFTKDPARFADEETIKNFEEEVEKIQA 211
+++++ + + E I +++ +K+ A
Sbjct: 606 LLKLWNVNTS-----ECIATYDQHEDKVWA 630
Score = 36.3 bits (80), Expect = 0.029
Identities = 49/213 (23%), Positives = 92/213 (43%), Gaps = 24/213 (11%)
Query: 9 SAILNGHSMDVRS----VAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVS 64
S +L GH V S V+++ I++ S+D+T +LW+ K + V T GH +
Sbjct: 394 SYVLAGHKEVVLSLDTCVSSSGNVLIVTGSKDKTVRLWNATS-KSCIGVGT--GHNGDIL 450
Query: 65 CICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGI-LL 123
+ + SF V+GS D T+ ++L DG + E SV D I +
Sbjct: 451 AVAFAKKSFSF----FVSGSGDRTLKVWSL-DGISEDSEEPINLKTRSVVAAHDKDINSV 505
Query: 124 SISINPAVQNGFATSGEGGSVRLWTGGDCIREIRLP--VQSVWSVT-CLENGDIVTGSSD 180
+++ N ++ T E + +W D + + L + ++SV + ++T S D
Sbjct: 506 AVARNDSL---VCTGSEDRTASIWRLPDLVHVVTLKGHKRRIFSVEFSTVDQCVMTASGD 562
Query: 181 GVIRVFTKDPARFADEETIKNFEEEVEKIQASS 213
++++ +D +K FE + +S
Sbjct: 563 KTVKIWA-----ISDGSCLKTFEGHTSSVLRAS 590
Score = 33.1 bits (72), Expect = 0.27
Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 11/131 (8%)
Query: 5 DYKLSAILNGHSMDVRSVAATKEFCIL-SASRDRTAKLWHPEGVKEFVNVITYKGHRNFV 63
D + + + G S + ++A + + +L SA R ++W E +K + ++KGH V
Sbjct: 49 DSSVKSTIEGESDTLTALALSPDDKLLFSAGHSRQIRVWDLETLK---CIRSWKGHEGPV 105
Query: 64 SCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSV--SPGRDSGI 121
+ C + GL+ T D +L +++ G GH+ V S+ P + I
Sbjct: 106 MGMA----CHA-SGGLLATAGADRKVLVWDVDGGFCTHYFRGHKGVVSSILFHPDSNKNI 160
Query: 122 LLSISINPAVQ 132
L+S S + V+
Sbjct: 161 LISGSDDATVR 171
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 62.9 bits (146), Expect = 3e-10
Identities = 58/202 (28%), Positives = 101/202 (50%), Gaps = 20/202 (9%)
Query: 14 GHSMDVRSVA-ATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPPC 72
GH+ DV SVA +T I+SASRDRT KLW+ G ++ + GH+ +VSC+ + P
Sbjct: 103 GHTKDVLSVAFSTDNRQIVSASRDRTIKLWNTLGECKY-TISEADGHKEWVSCVRFSPNT 161
Query: 73 VSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISINPAVQ 132
+ P +V+ S D T+ +NLQ+ + TL GH SG L +++++P
Sbjct: 162 L-VP--TIVSASWDKTVKVWNLQNCKLRNTLAGH------------SGYLNTVAVSPD-G 205
Query: 133 NGFATSGEGGSVRLWTGGDCIREIRLPVQSVWSVTCLE-NGDIVTGSSDGVIRVFTKDPA 191
+ A+ G+ G + LW + + L S+ C N + +++ IR++ + +
Sbjct: 206 SLCASGGKDGVILLWDLAEGKKLYSLEAGSIIHSLCFSPNRYWLCAATENSIRIWDLE-S 264
Query: 192 RFADEETIKNFEEEVEKIQASS 213
+ E+ + + E EK S+
Sbjct: 265 KSVVEDLKVDLKAEAEKTDGST 286
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 62.9 bits (146), Expect = 3e-10
Identities = 40/112 (35%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 14 GHSMDVRSVAATKEFC-ILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPPC 72
GH+ DV SVA + + I+SASRDRT KLW+ G ++ +GHR++VSC+ + P
Sbjct: 103 GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 162
Query: 73 VSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLS 124
+ + +V+ S D T+ +NL + + TL GH V +V+ D + S
Sbjct: 163 L---QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCAS 211
Score = 28.7 bits (61), Expect = 5.9
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 9/123 (7%)
Query: 8 LSAILNGHSMDVRSVAATKEFC--ILSASRDRTAKLWHPEGVKEFVNVITYK--GHRNFV 63
L + H+ V ++A + I+SASRD++ LW + V + GH +FV
Sbjct: 7 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFV 66
Query: 64 SCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILL 123
+ +S ++GS D + ++L G GH V SV+ D+ ++
Sbjct: 67 EDV-----VLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIV 121
Query: 124 SIS 126
S S
Sbjct: 122 SAS 124
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 59.3 bits (137), Expect = 4e-09
Identities = 40/112 (35%), Positives = 63/112 (56%), Gaps = 5/112 (4%)
Query: 14 GHSMDVRSVA-ATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPPC 72
GH+ DV SVA +T I+SASRDRT KLW+ G ++ + GH+ +VSC+ + P
Sbjct: 103 GHTKDVLSVAFSTDNRQIVSASRDRTIKLWNTLGECKY-TISEGDGHKEWVSCVRFSPNT 161
Query: 73 VSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLS 124
+ P +V+ S D T+ +NLQ+ + +L GH + +V+ D + S
Sbjct: 162 L-VP--TIVSASWDKTVKVWNLQNCKLRNSLVGHSGYLNTVAVSPDGSLCAS 210
Score = 30.7 bits (66), Expect = 1.5
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 9/123 (7%)
Query: 8 LSAILNGHSMDVRSVAAT--KEFCILSASRDRTAKLWHPEGVKEFVNVITYK--GHRNFV 63
L I+ H+ V ++A I++ASRD++ LW + V + GH +FV
Sbjct: 7 LKGIMRAHTDIVTAIATPIDNSDIIVTASRDKSIILWKLTKDDKSYGVAQRRLTGHSHFV 66
Query: 64 SCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILL 123
+ +S ++GS D + ++L G GH V SV+ D+ ++
Sbjct: 67 EDVV-----LSSDGQFALSGSWDGELRLWDLATGETTRRFVGHTKDVLSVAFSTDNRQIV 121
Query: 124 SIS 126
S S
Sbjct: 122 SAS 124
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 58.4 bits (135), Expect = 6e-09
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 8/123 (6%)
Query: 5 DYKLSAILNGHSMDVRSVA-ATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFV 63
+Y L GHS + +A ++ SAS D T ++W E + V+ +GH NFV
Sbjct: 74 NYSLIHRYEGHSSGISDLAWSSDSHYTCSASDDCTLRIWDARSPYECLKVL--RGHTNFV 131
Query: 64 SCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILL 123
C+ + PP L+V+GS D TI + ++ G + ++ H + SV RD +++
Sbjct: 132 FCVNFNPP-----SNLIVSGSFDETIRIWEVKTGKCVRMIKAHSMPISSVHFNRDGSLIV 186
Query: 124 SIS 126
S S
Sbjct: 187 SAS 189
Score = 46.4 bits (105), Expect = 3e-05
Identities = 35/86 (40%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 30 ILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPPCVSFPEG-LVVTGSNDNT 88
IL A+ D T KL + +F+ V Y GH N V CI S G +V+GS DN
Sbjct: 228 ILVATLDSTLKLSN-YATGKFLKV--YTGHTNKVFCIT---SAFSVTNGKYIVSGSEDNC 281
Query: 89 ILGYNLQDGTVLLTLEGHENAVCSVS 114
+ ++LQ +L LEGH +AV SVS
Sbjct: 282 VYLWDLQARNILQRLEGHTDAVISVS 307
Score = 30.3 bits (65), Expect = 1.9
Identities = 47/182 (25%), Positives = 84/182 (46%), Gaps = 21/182 (11%)
Query: 6 YKLSAILNGHSMDVRSVAATKEF-CILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVS 64
Y+ +L GH+ V V I+S S D T ++W VK V K H +S
Sbjct: 118 YECLKVLRGHTNFVFCVNFNPPSNLIVSGSFDETIRIWE---VKTGKCVRMIKAHSMPIS 174
Query: 65 CICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSG--IL 122
+ + + L+V+ S+D + ++ ++GT L TL ++ S + +G IL
Sbjct: 175 SVHF-----NRDGSLIVSASHDGSCKIWDAKEGTCLKTLIDDKSPAVSFAKFSPNGKFIL 229
Query: 123 LSISINPAVQNGFATSGEGGSVRLWTGGDCIREIRLPVQSVWSVTCLENGD-IVTGSSDG 181
++ + + +AT G ++++TG ++ + S +SVT NG IV+GS D
Sbjct: 230 VATLDSTLKLSNYAT---GKFLKVYTGH--TNKV-FCITSAFSVT---NGKYIVSGSEDN 280
Query: 182 VI 183
+
Sbjct: 281 CV 282
Score = 28.3 bits (60), Expect = 7.8
Identities = 31/143 (21%), Positives = 65/143 (45%), Gaps = 22/143 (15%)
Query: 48 KEFVNVITYKGHRNFVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHE 107
K + ++ T +GH +SC+ + S L+ + S D T++ ++ + +++ EGH
Sbjct: 31 KPYRHLKTLEGHTAAISCVKF-----SNDGNLLASASVDKTMILWSATNYSLIHRYEGHS 85
Query: 108 NAVCSVSPGRDSGILLSISINPAVQNGFATSGEGGSVRLWTGG---DCIREIRLPVQSVW 164
+ + ++ DS S S + ++R+W +C++ +R V+
Sbjct: 86 SGISDLAWSSDSHYTCSAS-------------DDCTLRIWDARSPYECLKVLRGHTNFVF 132
Query: 165 SVTCLENGD-IVTGSSDGVIRVF 186
V + IV+GS D IR++
Sbjct: 133 CVNFNPPSNLIVSGSFDETIRIW 155
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 48.8 bits (111), Expect = 5e-06
Identities = 50/189 (26%), Positives = 90/189 (47%), Gaps = 28/189 (14%)
Query: 6 YKLSAILNGHSMDVRSVAATKEFCIL-SASRDRTAKLWHPEGVKEFVN--VITYKGHRNF 62
Y S L H+ V SV + + +L SAS D+T + + + + + V + GH N
Sbjct: 14 YVHSQTLTSHNRAVSSVKFSSDGRLLASASADKTIRTYTINTINDPIAEPVQEFTGHENG 73
Query: 63 VSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHEN-AVCSVSPGRDSGI 121
+S + + S +V+ S+D T+ ++++ G+++ TL GH N A C
Sbjct: 74 ISDVAF-----SSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYAFC---------- 118
Query: 122 LLSISINPAVQNGFATSGE-GGSVRLW--TGGDCIREIRLPVQSVWSVTCLENGDIVTGS 178
++ NP Q+ SG +VR+W T G C++ + V +V +G ++ S
Sbjct: 119 ---VNFNP--QSNMIVSGSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSS 173
Query: 179 S-DGVIRVF 186
S DG+ R++
Sbjct: 174 SYDGLCRIW 182
Score = 43.6 bits (98), Expect = 2e-04
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 30 ILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPPCVSFPEGL-VVTGSNDNT 88
IL + D T +LW+ K F+ TY GH N CI S G +V+GS DN
Sbjct: 213 ILVGTLDNTLRLWNISSAK-FLK--TYTGHVNAQYCIS---SAFSVTNGKRIVSGSEDNC 266
Query: 89 ILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISINPAVQ 132
+ + L +L LEGH V +V+ ++ S S++ V+
Sbjct: 267 VHMWELNSKKLLQKLEGHTETVMNVACHPTENLIASGSLDKTVR 310
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 48.0 bits (109), Expect = 9e-06
Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 23/181 (12%)
Query: 12 LNGHSMDVRSVAATKEFC--ILSASRDRTAKLWHPEGVKEF-VNVITYKGHRNFVSCICW 68
L GH+ V +V +K ++SA+ DRT KLW K + N + + + N +
Sbjct: 311 LTGHTDKVCAVDVSKFSSRHVVSAAYDRTIKLWDLH--KGYCTNTVLFTSNCNAI----- 363
Query: 69 VPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISIN 128
C+S V +G D + +++Q G +L + GH +AV SVS R+ +L+ S
Sbjct: 364 ---CLSIDGLTVFSGHMDGNLRLWDIQTGKLLSEVAGHSSAVTSVSLSRNGNRILT-SGR 419
Query: 129 PAVQNGFATSGEGGSVRLWTGGDCIREIRLPVQSVWSVTCLENGD--IVTGSSDGVIRVF 186
V N F T L G+ RL S WS +C+ D + GS+DG + V+
Sbjct: 420 DNVHNVFDTRTLEICGTLRASGN-----RL--ASNWSRSCISPDDDYVAAGSADGSVHVW 472
Query: 187 T 187
+
Sbjct: 473 S 473
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 80 VVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDS 119
V+ ++ N + +++ G V TL GH + VC+V + S
Sbjct: 288 VIAATSSNNLFVWDVSSGRVRHTLTGHTDKVCAVDVSKFS 327
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 46.4 bits (105), Expect = 3e-05
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 8 LSAILNGHSMDVRSVAATKEFCIL-SASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCI 66
L L GH VR +A + + SA D+ K W E K + +Y GH + V C+
Sbjct: 210 LKLTLTGHIEQVRGLAVSNRHTYMFSAGDDKQVKCWDLEQNKV---IRSYHGHLSGVYCL 266
Query: 67 CWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSV 113
P +++TG D+ ++++ + L GH+N VCSV
Sbjct: 267 ALHPTL-----DVLLTGGRDSVCRVWDIRTKMQIFALSGHDNTVCSV 308
Score = 39.9 bits (89), Expect = 0.002
Identities = 44/173 (25%), Positives = 80/173 (46%), Gaps = 24/173 (13%)
Query: 30 ILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPPCVSFPEGLVVTGSNDNTI 89
+L+ RD ++W ++ + + GH N V C + P + P+ VVTGS+D TI
Sbjct: 275 LLTGGRDSVCRVWD---IRTKMQIFALSGHDNTV-CSVFTRP--TDPQ--VVTGSHDTTI 326
Query: 90 LGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISINPAVQNGFATSGEGGSVR--LW 147
++L+ G + TL H+ +V +++++P +N FA++ + + L
Sbjct: 327 KFWDLRYGKTMSTLTHHKKSV------------RAMTLHPK-ENAFASASADNTKKFSLP 373
Query: 148 TGGDCIREIRLPVQSVWSVTCLENGDIVTGSSDGVIRVFT-KDPARFADEETI 199
G C + + ++ E+G +VTG +G I + K F ETI
Sbjct: 374 KGEFCHNMLSQQKTIINAMAVNEDGVMVTGGDNGSIWFWDWKSGHSFQQSETI 426
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 32 SASRDRTAKLW-HPEGVKEFVNVITYKGHRNFVSCICWVPPCVSFPEGLVVTGSNDNTIL 90
+A +R W PE + N +GH +V + + P F TGS D TI
Sbjct: 147 AALMERIPSRWPRPEWHAPWKNYRVIQGHLGWVRSVAFDPSNEWF-----CTGSADRTIK 201
Query: 91 GYNLQDGTVLLTLEGH 106
+++ G + LTL GH
Sbjct: 202 IWDVATGVLKLTLTGH 217
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 44.8 bits (101), Expect = 8e-05
Identities = 38/158 (24%), Positives = 75/158 (47%), Gaps = 27/158 (17%)
Query: 32 SASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPPCVSFPEGLVVTGSNDNTILG 91
S S DRTA++W + ++ + ++ GH +S + W P C + TGS+D T+
Sbjct: 477 SCSHDRTARIWSMDRIQP-LRIMA--GH---LSDVDWHPNC-----NYIATGSSDKTVRL 525
Query: 92 YNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISINPAVQNGFATSGEGGSVRLW--TG 149
+++Q G + GH + V S++ D + A+ E G++ +W +
Sbjct: 526 WDVQTGECVRIFIGHRSMVLSLAMSPDGRYM-------------ASGDEDGTIMMWDLST 572
Query: 150 GDCIREIRLPVQSVWSVTCLENGDIV-TGSSDGVIRVF 186
CI + VWS++ G ++ +GS+D ++++
Sbjct: 573 ARCITPLMGHNSCVWSLSYSGEGSLLASGSADCTVKLW 610
Score = 38.3 bits (85), Expect = 0.007
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 30 ILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPPCVSFPEGLVVTGSNDNTI 89
I + S D+T +LW + E V + + GHR+ V + P + +G D TI
Sbjct: 514 IATGSSDKTVRLWDVQ-TGECVRI--FIGHRSMVLSLAMSPD-----GRYMASGDEDGTI 565
Query: 90 LGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISINPAVQNGFATS 138
+ ++L + L GH + V S+S + +L S S + V+ TS
Sbjct: 566 MMWDLSTARCITPLMGHNSCVWSLSYSGEGSLLASGSADCTVKLWDVTS 614
Score = 31.5 bits (68), Expect = 0.83
Identities = 50/187 (26%), Positives = 75/187 (40%), Gaps = 30/187 (16%)
Query: 11 ILNGHSMDVRSVAATK--EFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICW 68
+L GHS V S + +F +LS+S D T +LW K N++ YKGH V W
Sbjct: 413 LLLGHSGPVYSATFSPPGDF-VLSSSADTTIRLW---STKLNANLVCYKGHNYPV----W 464
Query: 69 VPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISIN 128
F + S+D T +++ L + GH L + +
Sbjct: 465 DAQFSPFGH-YFASCSHDRTARIWSMDRIQPLRIMAGH---------------LSDVDWH 508
Query: 129 PAVQNGFATSGEGGSVRLW--TGGDCIREIRLPVQSVWSVTCLENGD-IVTGSSDGVIRV 185
P N AT +VRLW G+C+R V S+ +G + +G DG I +
Sbjct: 509 PNC-NYIATGSSDKTVRLWDVQTGECVRIFIGHRSMVLSLAMSPDGRYMASGDEDGTIMM 567
Query: 186 FTKDPAR 192
+ AR
Sbjct: 568 WDLSTAR 574
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 44.0 bits (99), Expect = 1e-04
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 10 AILNGHSMDVRSVAATK-EFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICW 68
A+L H V + + C+ +AS DRTAKLW +G + T++GH + ++ + +
Sbjct: 292 AVLKDHKERATDVVFSPVDDCLATASADRTAKLWKTDGTL----LQTFEGHLDRLARVAF 347
Query: 69 VPPCVSFPEGLVV-TGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISI 127
P G + T S D T +++ G LL EGH +V ++ +D + S +
Sbjct: 348 ------HPSGKYLGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAFQQDGALAASCGL 401
Query: 128 N 128
+
Sbjct: 402 D 402
Score = 34.3 bits (75), Expect = 0.12
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 5 DYKLSAILNGHSMDVRSVAATKEF-CILSASRDRTAKLWHPEG 46
D+ L L GH V S+ T + CI + S DRT KLW G
Sbjct: 497 DFSLVKSLAGHESKVASLDITADSSCIATVSHDRTIKLWTSSG 539
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 44.0 bits (99), Expect = 1e-04
Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 24/180 (13%)
Query: 11 ILNGHSMDVRSVAATKEFC--ILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICW 68
I GHS V V + SAS DRT K+W+ T H+ V+C+ +
Sbjct: 137 IFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN---FTLDAHQKGVNCVDY 193
Query: 69 VPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISIN 128
+ ++TGS+D+T ++ Q + + TLEGH + V +V + I++
Sbjct: 194 F---TGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIII----- 245
Query: 129 PAVQNGFATSGEGGSVRLW--TGGDCIREIRLPVQSVWSVTCLENG-DIVTGSSDGVIRV 185
T E G+VR+W T + ++ VW++ +++ +V G +G I V
Sbjct: 246 --------TGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYIKSSRRVVIGYDEGTIMV 297
Score = 37.1 bits (82), Expect = 0.017
Identities = 46/183 (25%), Positives = 75/183 (40%), Gaps = 27/183 (14%)
Query: 11 ILNGHSMDVRSVAATKEF-CILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWV 69
+ HS +R VA +LS+S D KLW E K + ++GH ++V + +
Sbjct: 94 VFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE--KGWACTQIFEGHSHYVMQVTFN 151
Query: 70 PPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVS--PGRDSGILLSISI 127
P + + S D TI +NL TL+ H+ V V G D L+
Sbjct: 152 PKDTN----TFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLI---- 203
Query: 128 NPAVQNGFATSGEGGSVRLWT--GGDCIREIRLPVQSVWSVTCL--ENGDIVTGSSDGVI 183
T + + ++W C++ + +V S C E I+TGS DG +
Sbjct: 204 ---------TGSDDHTAKVWDYQTKSCVQTLEGHTHNV-SAVCFHPELPIIITGSEDGTV 253
Query: 184 RVF 186
R++
Sbjct: 254 RIW 256
Score = 29.1 bits (62), Expect = 4.4
Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 25/141 (17%)
Query: 53 VITYKGHRNFVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTL-EGHENAVC 111
V ++ H +++ C+ V P + + V++ S+D I ++ + G + EGH + V
Sbjct: 92 VKVFEAHSDYIRCVA-VHPTLPY----VLSSSDDMLIKLWDWEKGWACTQIFEGHSHYV- 145
Query: 112 SVSPGRDSGILLSISINPAVQNGFATSGEGGSVRLWTGGDCIREIRLPVQSVWSVTCLE- 170
+ ++ NP N FA++ ++++W G L V C++
Sbjct: 146 -----------MQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQK-GVNCVDY 193
Query: 171 --NGD---IVTGSSDGVIRVF 186
GD ++TGS D +V+
Sbjct: 194 FTGGDKPYLITGSDDHTAKVW 214
>At1g24530.1 68414.m03088 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 7 WD-40 repeats (PF00400)
Length = 418
Score = 44.0 bits (99), Expect = 1e-04
Identities = 53/208 (25%), Positives = 101/208 (48%), Gaps = 23/208 (11%)
Query: 15 HSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPPCVS 74
H+ V ++A + F I S S D+T K+W ++ ++ K H + V+ I VS
Sbjct: 194 HADAVTALAVSDGF-IYSVSWDKTLKIWRASDLRCKESI---KAHDDAVNAI-----AVS 244
Query: 75 FPEGLVVTGSNDNTILGYNLQDG----TVLLTLEGHENAVCSVSPGRDSGILLSISINPA 130
G V TGS D I + G T++ TLE H++AV +++ D +L S S + +
Sbjct: 245 -TNGTVYTGSADRRIRVWAKPTGEKRHTLVATLEKHKSAVNALALNDDGSVLFSGSCDRS 303
Query: 131 VQNGFATSGEGGSVRLWTGGDCIREIRLPVQSVWSVTCLENGDIVTGSSDGVIRVFTKDP 190
+ E S + G +R + S+++V+ L +++GS+D +R++ + P
Sbjct: 304 I---LVWEREDTSNYMAVRG-ALRGHDKAILSLFNVSDL----LLSGSADRTVRIWRRGP 355
Query: 191 -ARFADEETIKNFEEEVEKIQASSEQEI 217
+ ++ E + + V+ + A E+E+
Sbjct: 356 DSSYSCLEVLSGHTKPVKSLAAVREKEL 383
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 43.6 bits (98), Expect = 2e-04
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 17/75 (22%)
Query: 78 GLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISINPAVQNGFAT 137
G V TGS DNTI ++LQDG++L T+ GH++ V ++ V NG
Sbjct: 598 GHVYTGSGDNTIKAWSLQDGSLLCTMSGHKSVVSTL----------------VVVNGVLY 641
Query: 138 SGE-GGSVRLWTGGD 151
SG G+VRLW+ D
Sbjct: 642 SGSWDGTVRLWSLSD 656
Score = 33.1 bits (72), Expect = 0.27
Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 24/135 (17%)
Query: 19 VRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPPCVSFPEG 78
+ ++A ++ + + S D T K W +++ + T GH++ VS + V G
Sbjct: 589 IHALAYSEYGHVYTGSGDNTIKAW---SLQDGSLLCTMSGHKSVVSTLVVV-------NG 638
Query: 79 LVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPG---RDSGILLSISINPAVQNGF 135
++ +GS D T+ ++L D + LLT+ G E +PG RD ++ S+ I QNG
Sbjct: 639 VLYSGSWDGTVRLWSLSDNS-LLTVLGEE------TPGIIWRDDTLMKSMKI----QNGA 687
Query: 136 ATSGEGGSVRLWTGG 150
S L+TGG
Sbjct: 688 ILSIAVNGKWLFTGG 702
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 53 VITYKGHRNFVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCS 112
++ +GH V+C+ + P L+ TG++DN + +N+ GT +T H NAV +
Sbjct: 342 ILKQQGHYFDVNCVTYSPD-----SQLLATGADDNKVKVWNVMSGTCFITFTEHTNAVTA 396
Query: 113 VSPGRDSGILLSISINPAVQ 132
+ D+ LLS S++ V+
Sbjct: 397 LHFMADNHSLLSASLDGTVR 416
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 53 VITYKGHRNFVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCS 112
++ +GH V+C+ + P L+ TG++DN + +N+ GT +T H NAV +
Sbjct: 382 ILKQQGHYFDVNCVTYSPD-----SQLLATGADDNKVKVWNVMSGTCFITFTEHTNAVTA 436
Query: 113 VSPGRDSGILLSISINPAVQ 132
+ D+ LLS S++ V+
Sbjct: 437 LHFMADNHSLLSASLDGTVR 456
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 43.2 bits (97), Expect = 3e-04
Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 24/180 (13%)
Query: 11 ILNGHSMDVRSVAATKEFC--ILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICW 68
I GHS V V + SAS DRT K+W+ T H V+C+ +
Sbjct: 137 IFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN---FTLDAHLKGVNCVDY 193
Query: 69 VPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISIN 128
+ ++TGS+D+T ++ Q + + TLEGH + V +VS + I++
Sbjct: 194 F---TGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVSFHPELPIII----- 245
Query: 129 PAVQNGFATSGEGGSVRLW--TGGDCIREIRLPVQSVWSVTCLENG-DIVTGSSDGVIRV 185
T E G+VR+W T + ++ VW++ ++ +V G +G I V
Sbjct: 246 --------TGSEDGTVRIWHATTYRLENTLNYGLERVWAIGHIKGSRRVVIGYDEGSIMV 297
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 42.7 bits (96), Expect = 3e-04
Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 24/180 (13%)
Query: 11 ILNGHSMDVRSVAATKEFC--ILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICW 68
I GHS V V + SAS DRT K+W+ T H+ V+C+ +
Sbjct: 137 IFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLGSPDPN---FTLDAHQKGVNCVDY 193
Query: 69 VPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISIN 128
+ ++TGS+D+T ++ Q + + TL+GH + V +V + I++
Sbjct: 194 F---TGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIII----- 245
Query: 129 PAVQNGFATSGEGGSVRLW--TGGDCIREIRLPVQSVWSVTCLENG-DIVTGSSDGVIRV 185
T E G+VR+W T + ++ VW++ +++ +V G +G I V
Sbjct: 246 --------TGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYIKSSRRVVIGYDEGTIMV 297
Score = 28.7 bits (61), Expect = 5.9
Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 25/141 (17%)
Query: 53 VITYKGHRNFVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTL-EGHENAVC 111
V ++ H +++ C+ V P + + V++ S+D I ++ ++G + EGH + V
Sbjct: 92 VKVFEAHSDYIRCVA-VHPTLPY----VLSSSDDMLIKLWDWENGWACTQIFEGHSHYV- 145
Query: 112 SVSPGRDSGILLSISINPAVQNGFATSGEGGSVRLWTGGDCIREIRLPVQSVWSVTCLE- 170
+ + NP N FA++ ++++W G L V C++
Sbjct: 146 -----------MQVVFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQK-GVNCVDY 193
Query: 171 --NGD---IVTGSSDGVIRVF 186
GD ++TGS D +V+
Sbjct: 194 FTGGDKPYLITGSDDHTAKVW 214
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 42.7 bits (96), Expect = 3e-04
Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 24/180 (13%)
Query: 11 ILNGHSMDVRSVAATKEFC--ILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICW 68
I GHS V V + SAS DRT K+W+ T H+ V+C+ +
Sbjct: 137 IFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLGSPDPN---FTLDAHQKGVNCVDY 193
Query: 69 VPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISIN 128
+ ++TGS+D+T ++ Q + + TL+GH + V +V + I++
Sbjct: 194 F---TGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIII----- 245
Query: 129 PAVQNGFATSGEGGSVRLW--TGGDCIREIRLPVQSVWSVTCLENG-DIVTGSSDGVIRV 185
T E G+VR+W T + ++ VW++ +++ +V G +G I V
Sbjct: 246 --------TGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYIKSSRRVVIGYDEGTIMV 297
Score = 28.7 bits (61), Expect = 5.9
Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 25/141 (17%)
Query: 53 VITYKGHRNFVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTL-EGHENAVC 111
V ++ H +++ C+ V P + + V++ S+D I ++ ++G + EGH + V
Sbjct: 92 VKVFEAHSDYIRCVA-VHPTLPY----VLSSSDDMLIKLWDWENGWACTQIFEGHSHYV- 145
Query: 112 SVSPGRDSGILLSISINPAVQNGFATSGEGGSVRLWTGGDCIREIRLPVQSVWSVTCLE- 170
+ + NP N FA++ ++++W G L V C++
Sbjct: 146 -----------MQVVFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQK-GVNCVDY 193
Query: 171 --NGD---IVTGSSDGVIRVF 186
GD ++TGS D +V+
Sbjct: 194 FTGGDKPYLITGSDDHTAKVW 214
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 42.7 bits (96), Expect = 3e-04
Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 24/180 (13%)
Query: 11 ILNGHSMDVRSVAATKEFC--ILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICW 68
I GHS V V + SAS DRT K+W+ T H+ V+C+ +
Sbjct: 137 IFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLGSPDPN---FTLDAHQKGVNCVDY 193
Query: 69 VPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISIN 128
+ ++TGS+D+T ++ Q + + TL+GH + V +V + I++
Sbjct: 194 F---TGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIII----- 245
Query: 129 PAVQNGFATSGEGGSVRLW--TGGDCIREIRLPVQSVWSVTCLENG-DIVTGSSDGVIRV 185
T E G+VR+W T + ++ VW++ +++ +V G +G I V
Sbjct: 246 --------TGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYIKSSRRVVIGYDEGTIMV 297
Score = 28.7 bits (61), Expect = 5.9
Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 25/141 (17%)
Query: 53 VITYKGHRNFVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTL-EGHENAVC 111
V ++ H +++ C+ V P + + V++ S+D I ++ ++G + EGH + V
Sbjct: 92 VKVFEAHSDYIRCVA-VHPTLPY----VLSSSDDMLIKLWDWENGWACTQIFEGHSHYV- 145
Query: 112 SVSPGRDSGILLSISINPAVQNGFATSGEGGSVRLWTGGDCIREIRLPVQSVWSVTCLE- 170
+ + NP N FA++ ++++W G L V C++
Sbjct: 146 -----------MQVVFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQK-GVNCVDY 193
Query: 171 --NGD---IVTGSSDGVIRVF 186
GD ++TGS D +V+
Sbjct: 194 FTGGDKPYLITGSDDHTAKVW 214
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 42.3 bits (95), Expect = 4e-04
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 14/110 (12%)
Query: 4 PDYKLSAILNGHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFV 63
P +KL A NGH + A K + +AS D+T K+W+ +G K V+T GH+
Sbjct: 203 PLHKLQAH-NGHILKCLLSPANKY--LATASSDKTVKIWNVDGFK-LEKVLT--GHQR-- 254
Query: 64 SCICWVPPCVSFPEG-LVVTGSNDNTILGYNLQDGTVLLTLEGHENA-VC 111
WV CV +G +VT S+D T +++ G + +GH A VC
Sbjct: 255 ----WVWDCVFSVDGEFLVTASSDMTARLWSMPAGKEVKVYQGHHKATVC 300
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 41.9 bits (94), Expect = 6e-04
Identities = 52/227 (22%), Positives = 96/227 (42%), Gaps = 23/227 (10%)
Query: 5 DYKLSAILNGHSMDVRSVAATKEFCILSA-SRDRTAKLWH--PEGVKEFVNVITYKGHRN 61
D + ++L GH +V+SV+ +L+ RD++ +W PE EF + GH
Sbjct: 81 DSESVSVLRGHESEVKSVSWNASGSLLATCGRDKSVWIWEIQPEEDDEFDTIAVLTGHSE 140
Query: 62 FVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDG----TVLLTL----EGHENAVCSV 113
V + W P ++ + S DNTI + +D + TL GH + V S+
Sbjct: 141 DVKMVLWHPTM-----DVLFSCSYDNTIKIWCSEDEDGDYNCVQTLSELNNGHSSTVWSI 195
Query: 114 SPGRDSGILLSISINPAV---QNGFATSGEGGSVRLWTGGDCIREIRLPVQSVWSVTCLE 170
S +++ S + AV + + G WT + ++++SV
Sbjct: 196 SFNAAGDKMVTCSDDLAVKIWKTDISRMQSGEGYVPWTHVCTLSGFH--DRTIYSVHWSR 253
Query: 171 NGDIVTGSSDGVIRVFTKDPARFADEETIKNF--EEEVEKIQASSEQ 215
+G I +G+ D I++F + D + K +E+ ++ +S Q
Sbjct: 254 DGVIASGAGDDTIQLFVDSDSDSVDGPSYKLLVKKEKAHEMDVNSVQ 300
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 41.5 bits (93), Expect = 8e-04
Identities = 43/149 (28%), Positives = 63/149 (42%), Gaps = 22/149 (14%)
Query: 11 ILNGHSMDVRSVA----ATKEFCILSASRDRTAKLWHPE-GVKEFVNVITYKGHRNFVSC 65
I NGH V VA + +EFC S D LW G + V K H + C
Sbjct: 276 IYNGHKDTVEDVAFCPSSAQEFC--SVGDDSCLMLWDARTGTSPAMKV--EKAHDADLHC 331
Query: 66 ICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSI 125
+ W P L++TGS DNT+ ++ ++ LT G + V R +L +
Sbjct: 332 VDWNP----HDNNLILTGSADNTVRVFDRRN----LTSNGVGSPVYKFEGHR--AAVLCV 381
Query: 126 SINPAVQNGFATSGEGGSVRLWTGGDCIR 154
+P + F +S E G + +W DC R
Sbjct: 382 QWSPDKSSVFGSSAEDGLLNIW---DCDR 407
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 40.7 bits (91), Expect = 0.001
Identities = 44/183 (24%), Positives = 82/183 (44%), Gaps = 24/183 (13%)
Query: 13 NGHSMDVRSVA--ATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVP 70
+GH+ DV SV+ + +S S D TA+LW V T+ GH V+ + + P
Sbjct: 139 SGHTADVLSVSISGSNPNWFISGSCDSTARLWDTRAASRAVR--TFHGHEGDVNTVKFFP 196
Query: 71 PCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISINPA 130
F TGS+D T Y+++ G L + H + ++G + SI+ + +
Sbjct: 197 DGYRFG-----TGSDDGTCRLYDIRTGHQLQVYQPHGDG--------ENGPVTSIAFSVS 243
Query: 131 VQNGFATSGEGGSVRLWTG--GDCIREIRLPVQSVWS-VTCL----ENGDIVTGSSDGVI 183
+ FA + +W G+ + ++ L S + ++CL + + TGS D +
Sbjct: 244 GRLLFAGYASNNTCYVWDTLLGEVVLDLGLQQDSHRNRISCLGLSADGSALCTGSWDSNL 303
Query: 184 RVF 186
+++
Sbjct: 304 KIW 306
Score = 35.1 bits (77), Expect = 0.068
Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 15/133 (11%)
Query: 58 GHRNFVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGR 117
GHR +VSC +VP + ++T S D T + +++ G G G
Sbjct: 92 GHRGYVSCCQYVPN----EDAHLITSSGDQTCILWDVTTGLKTSVFGG------EFQSGH 141
Query: 118 DSGILLSISINPAVQNGFATSGEGGSVRLWTGGDCIREIRL---PVQSVWSVTCLENG-D 173
+ + LS+SI+ + N F + + RLW R +R V +V +G
Sbjct: 142 TADV-LSVSISGSNPNWFISGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFPDGYR 200
Query: 174 IVTGSSDGVIRVF 186
TGS DG R++
Sbjct: 201 FGTGSDDGTCRLY 213
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 40.7 bits (91), Expect = 0.001
Identities = 44/183 (24%), Positives = 82/183 (44%), Gaps = 24/183 (13%)
Query: 13 NGHSMDVRSVA--ATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVP 70
+GH+ DV SV+ + +S S D TA+LW V T+ GH V+ + + P
Sbjct: 201 SGHTADVLSVSISGSNPNWFISGSCDSTARLWDTRAASRAVR--TFHGHEGDVNTVKFFP 258
Query: 71 PCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISINPA 130
F TGS+D T Y+++ G L + H + ++G + SI+ + +
Sbjct: 259 DGYRFG-----TGSDDGTCRLYDIRTGHQLQVYQPHGDG--------ENGPVTSIAFSVS 305
Query: 131 VQNGFATSGEGGSVRLWTG--GDCIREIRLPVQSVWS-VTCL----ENGDIVTGSSDGVI 183
+ FA + +W G+ + ++ L S + ++CL + + TGS D +
Sbjct: 306 GRLLFAGYASNNTCYVWDTLLGEVVLDLGLQQDSHRNRISCLGLSADGSALCTGSWDSNL 365
Query: 184 RVF 186
+++
Sbjct: 366 KIW 368
Score = 35.1 bits (77), Expect = 0.068
Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 15/133 (11%)
Query: 58 GHRNFVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGR 117
GHR +VSC +VP + ++T S D T + +++ G G G
Sbjct: 154 GHRGYVSCCQYVPN----EDAHLITSSGDQTCILWDVTTGLKTSVFGG------EFQSGH 203
Query: 118 DSGILLSISINPAVQNGFATSGEGGSVRLWTGGDCIREIRL---PVQSVWSVTCLENG-D 173
+ + LS+SI+ + N F + + RLW R +R V +V +G
Sbjct: 204 TADV-LSVSISGSNPNWFISGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFPDGYR 262
Query: 174 IVTGSSDGVIRVF 186
TGS DG R++
Sbjct: 263 FGTGSDDGTCRLY 275
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 40.3 bits (90), Expect = 0.002
Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 24/216 (11%)
Query: 4 PDYKLSAILNGHSMDVRSVAATKEFCIL-SASRDRTAKLWHPEGVKEFVNVITYKGHRNF 62
P + S + GH+ V V+ + + L S S D T +LW + + T KGH+N+
Sbjct: 97 PVNRCSQTIAGHAEAVLCVSFSPDGKQLASGSGDTTVRLWD---LYTETPLFTCKGHKNW 153
Query: 63 VSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVL-LTLEGHENAVCSVSPGRDSGI 121
V + W P +V+GS I +N + G + L GH+ + +S +
Sbjct: 154 VLTVAWSPDGKH-----LVSGSKSGEICCWNPKKGELEGSPLTGHKKWITGIS---WEPV 205
Query: 122 LLSISINPAVQNGFATSGEGGSVRLWTGGDCIREIRLPVQSVWSVTCLE---NGDIVTGS 178
LS +P F TS + G R+W + I +VTC++ +G I TGS
Sbjct: 206 HLS---SPC--RRFVTSSKDGDARIW-DITLKKSIICLSGHTLAVTCVKWGGDGIIYTGS 259
Query: 179 SDGVIRVFTKDPARFADEETIKNFEEEVEKIQASSE 214
D I+++ + E +K + + S+E
Sbjct: 260 QDCTIKMWETTQGKLIRE--LKGHGHWINSLALSTE 293
Score = 35.9 bits (79), Expect = 0.039
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 11/115 (9%)
Query: 12 LNGHSMDVRSVAATKEF-CILSASRDRTAKLWHPEGVK-EFVNVITYKGHRNFVSCICWV 69
L GH V V + + I SAS D++ +LW+ G+ +FV V ++GH V + W
Sbjct: 356 LTGHQQLVNHVYFSPDGKWIASASFDKSVRLWN--GITGQFVTV--FRGHVGPVYQVSW- 410
Query: 70 PPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLS 124
S L+++GS D+T+ + ++ + L GH + V +V D ++S
Sbjct: 411 ----SADSRLLLSGSKDSTLKIWEIRTKKLKQDLPGHADEVFAVDWSPDGEKVVS 461
Score = 32.7 bits (71), Expect = 0.36
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 30 ILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPPCVSFPEGLVVTGSNDNTI 89
++S S D T LW P K+ +T GH+ V+ + + P + + S D ++
Sbjct: 332 LVSGSDDFTMFLWEPSVSKQPKKRLT--GHQQLVNHVYFSPD-----GKWIASASFDKSV 384
Query: 90 LGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLS 124
+N G + GH V VS DS +LLS
Sbjct: 385 RLWNGITGQFVTVFRGHVGPVYQVSWSADSRLLLS 419
>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); U3
snoRNP-associated 55-kDa protein, Homo sapiens,
gb:NP_004695; Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) [Podospora anserina]
Length = 504
Score = 40.3 bits (90), Expect = 0.002
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 15 HSMDVRSVAATKEFCILSASR-DRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPPCV 73
HS + ++A + + L+ DR +W V+ +V + GHRN VSC+C+
Sbjct: 221 HSRESLALAVSSDGRYLATGGVDRHVHIWD---VRTREHVQAFPGHRNTVSCLCF----- 272
Query: 74 SFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSV 113
+ + +GS D T+ +N++D + GH+ + ++
Sbjct: 273 RYGTSELYSGSFDRTVKVWNVEDKAFITENHGHQGEILAI 312
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 40.3 bits (90), Expect = 0.002
Identities = 58/225 (25%), Positives = 98/225 (43%), Gaps = 29/225 (12%)
Query: 18 DVRSVAATKEFC-ILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPPCVSFP 76
DV +VA + + I A D T K+++ + +K ++++ GH+ V CI +S
Sbjct: 542 DVLAVAISPDAKHIAVALLDSTVKVFYMDSLKFYLSLY---GHKLPVMCID-----ISSD 593
Query: 77 EGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISINPAVQNGFA 136
L+VTGS D + + L G ++ H ++V V R++ L SI
Sbjct: 594 GELIVTGSQDKNLKIWGLDFGDCHKSIFAHGDSVMGVKFVRNTHYLFSI----------- 642
Query: 137 TSGEGGSVRLWTGGDCIREIRLPVQ--SVWSVTCLENGD-IVTGSSDGVIRVFTK-DPAR 192
G+ V+ W + L +W + GD +VTGS D +R + + +
Sbjct: 643 --GKDRLVKYWDADKFEHLLTLEGHHAEIWCLAISNRGDFLVTGSHDRSMRRWDRSEEPF 700
Query: 193 FADEETIKNFEEEVE-KIQASSEQEIGGFKVSELPGPEVLLEPGK 236
F +EE K EE E +I +++ G + E+P V GK
Sbjct: 701 FLEEEKEKRLEELFESEIDNAADDRHG--PMEEIPEEGVAALAGK 743
Score = 32.3 bits (70), Expect = 0.48
Identities = 42/182 (23%), Positives = 79/182 (43%), Gaps = 26/182 (14%)
Query: 9 SAILNGHSMDVRSVAATKEFCILSASRDRTAKLWHPE-GVKEFVNVITYKGHRNFVSCIC 67
S+ G S+ V S+A++ + D + ++W E G E + + H+ V+ +
Sbjct: 58 SSSRGGPSLAVTSIASSASSLVAVGYADGSIRIWDTEKGTCE----VNFNSHKGAVTALR 113
Query: 68 WVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISI 127
+ + ++ +GS DN I+ +++ + L L GH + V + D G L
Sbjct: 114 Y-----NKVGSMLASGSKDNDIILWDVVGESGLFRLRGHRDQVTDL-VFLDGGKKL---- 163
Query: 128 NPAVQNGFATSGEGGSVRLW--TGGDCIREIRLPVQSVWSV-TCLENGDIVTGSSDGVIR 184
+S + +R+W C++ + VWSV T E +VTGS+D +R
Sbjct: 164 --------VSSSKDKFLRVWDLETQHCMQIVSGHHSEVWSVDTDPEERYVVTGSADQELR 215
Query: 185 VF 186
+
Sbjct: 216 FY 217
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 14 GHSMDVRSVAATKEFCILSASRDRTAKLWHP 44
GH DVRSV +++ +L ++ K+W+P
Sbjct: 404 GHRSDVRSVTLSEDNTLLMSTSHSEVKIWNP 434
>At4g03020.1 68417.m00410 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to L. erythrorhizon LEC14B, GenBank accession
number Q40153
Length = 493
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 52 NVITYKGHRNFVSCI-CWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAV 110
+V TYKGH + I C+ P S + + TGSND+++ Y+L G + L+ H + V
Sbjct: 387 SVSTYKGHSVLRTLIRCYFSPAHSTGQKYIYTGSNDSSVYIYDLVSGDKVAVLKHHSSPV 446
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 80 VVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILL 123
VV GS+D++I Y+L+ V L H + V +V +SG L+
Sbjct: 244 VVAGSSDDSIYVYDLEANRVSLRTVAHTSDVNTVCFADESGNLI 287
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 39.9 bits (89), Expect = 0.002
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 15/114 (13%)
Query: 15 HSMDVRSVAATKEF--CILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPPC 72
HS V S T+ I+S S D TAKLW +++ + T+ +
Sbjct: 137 HSSFVNSCCPTRRGPPLIISGSDDGTAKLWD---MRQRGAIQTFPDKYQITA-------- 185
Query: 73 VSFPEGL--VVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLS 124
VSF + + TG DN + ++L+ G +TLEGH++ + +S D LL+
Sbjct: 186 VSFSDAADKIFTGGVDNDVKVWDLRKGEATMTLEGHQDTITGMSLSPDGSYLLT 239
Score = 34.3 bits (75), Expect = 0.12
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Query: 5 DYKLSAILNGHSMDVRSVAATKEFC-ILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFV 63
D K +L GH + + T + I+SAS D+T + W E K+ + H +FV
Sbjct: 85 DCKNFMVLKGHKNAILDLHWTSDGSQIVSASPDKTVRAWDVETGKQIKKMAE---HSSFV 141
Query: 64 SCICWVPPCVSFPEGLVVTGSNDNTILGYNL-QDGTVLLTLEGHENAVCSVSPGRD 118
+ C P P L+++GS+D T +++ Q G + + ++ S S D
Sbjct: 142 NSCC---PTRRGPP-LIISGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDAAD 193
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 39.5 bits (88), Expect = 0.003
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 13 NGHSMDVRSVA--ATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVP 70
+GH+ DV SV+ + +S S D TA+LW V T+ GH V+ + + P
Sbjct: 201 SGHTADVLSVSISGSNPNWFISGSCDSTARLWDTRAASRAVR--TFHGHEGDVNTVKFFP 258
Query: 71 PCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGH 106
F TGS+D T Y+++ G L + H
Sbjct: 259 DGYRFG-----TGSDDGTCRLYDIRTGHQLQVYQPH 289
Score = 35.1 bits (77), Expect = 0.068
Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 15/133 (11%)
Query: 58 GHRNFVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGR 117
GHR +VSC +VP + ++T S D T + +++ G G G
Sbjct: 154 GHRGYVSCCQYVPN----EDAHLITSSGDQTCILWDVTTGLKTSVFGG------EFQSGH 203
Query: 118 DSGILLSISINPAVQNGFATSGEGGSVRLWTGGDCIREIRL---PVQSVWSVTCLENG-D 173
+ + LS+SI+ + N F + + RLW R +R V +V +G
Sbjct: 204 TADV-LSVSISGSNPNWFISGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFPDGYR 262
Query: 174 IVTGSSDGVIRVF 186
TGS DG R++
Sbjct: 263 FGTGSDDGTCRLY 275
>At5g52250.1 68418.m06485 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to photomorphogenesis repressor PnCOP1
(GI:11127996) [Ipomoea nil]
Length = 385
Score = 39.1 bits (87), Expect = 0.004
Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 18/137 (13%)
Query: 11 ILNGHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGH---RNFVSCIC 67
+L+GH+ V I++ S D + K W + + V TY+GH RNFV
Sbjct: 251 VLDGHTKTVTYARFMDSHTIVTGSTDGSLKQWDIDNGRRVVR--TYRGHVNSRNFVGLSV 308
Query: 68 WVPPCVSFPEGLVVTGSNDNTILGYNLQ-DGTVLLTLEGHENAVCSVSPGRDSGILLSIS 126
W GLVV+GS +N + Y+ + + V + GH N G D + S+
Sbjct: 309 WRHG------GLVVSGSENNQVFVYDKRWEEPVWVCGLGHTNRF-----GSDRRFVSSVC 357
Query: 127 INPAVQNGFATSGEGGS 143
+ V + T GGS
Sbjct: 358 LR-QVDEDWCTLVAGGS 373
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 39.1 bits (87), Expect = 0.004
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 10/108 (9%)
Query: 12 LNGHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPP 71
L GH + ++ +K +LS+S D+T +LW E K + + H ++V+CI + P
Sbjct: 502 LKGHLDAILDLSWSKSQLLLSSSMDKTVRLWDIE-TKTCLKLF---AHNDYVTCIQFSP- 556
Query: 72 CVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHE--NAVCSVSPGR 117
E ++GS D I +++QD V+ + HE A C G+
Sbjct: 557 ---VDENYFLSGSLDAKIRIWSIQDRHVVEWSDLHEMVTAACYTPDGQ 601
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 12 LNGHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVP 70
L GH+ DV +A + +LSAS+D+T +LW G + ++V H N+V+C+ + P
Sbjct: 268 LYGHTGDVLDLAWSDSNLLLSASKDKTVRLWR-TGCDQCLHVF---HHNNYVTCVEFNP 322
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 38.3 bits (85), Expect = 0.007
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 14 GHSMDVRSVAATKEFCIL-SASRDRTAKLWH--PEGVKEFVNVITYKGHRNFVSCICWVP 70
GH V SVA L S S D+TA++W+ P G + + + KGH + V +CW P
Sbjct: 18 GHKKKVHSVAWNSNGTKLASGSVDQTARIWNIEPHGHSKAKD-LELKGHTDSVDQLCWDP 76
Query: 71 PCVSFPEGLVVTGSNDNTILGYNLQDG 97
LV T S D ++ ++ + G
Sbjct: 77 K----HSDLVATASGDKSVRLWDARSG 99
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 37.5 bits (83), Expect = 0.013
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 30 ILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPPCVSFPEGLVVTGSNDNTI 89
+++ S DR K+W E + + + +GH ++ + VS LV + SND I
Sbjct: 320 VITGSDDRLVKIWSMETA---LCLASCRGHEGDITDLA-----VSSNNALVASASNDFVI 371
Query: 90 LGYNLQDGTVLLTLEGHENAVCSVS 114
+ L DG + L GH AV +++
Sbjct: 372 RVWRLPDGMPISVLRGHTGAVTAIA 396
Score = 34.7 bits (76), Expect = 0.089
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 47 VKEFVNVITYKGHRNFVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGH 106
V++ N+ +GHRN V C + V+TGS+D + ++++ L + GH
Sbjct: 292 VQKMQNIKKLRGHRNAVYCAIF-----DRSGRYVITGSDDRLVKIWSMETALCLASCRGH 346
Query: 107 ENAVCSVSPGRDSGILLSIS 126
E + ++ ++ ++ S S
Sbjct: 347 EGDITDLAVSSNNALVASAS 366
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 37.5 bits (83), Expect = 0.013
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Query: 47 VKEFVNVITYKGHRNFVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGH 106
++ F + ++ H+ IC + + + ++ TG D T + ++ G +L TL GH
Sbjct: 206 LERFTQLSSHPLHKTNKPGICSMD--ILHSKDVIATGGVDATAVLFDRPSGQILSTLTGH 263
Query: 107 ENAVCSVSPGRDSGILLSISINPAVQNGFATSGEGGSVRLWTGGDCIREIR 157
V SV DS ++L+ S + V+ + G+G +T D E+R
Sbjct: 264 SKKVTSVKFVGDSDLVLTASADKTVRI-WRNPGDGNYACGYTLNDHSAEVR 313
Score = 37.1 bits (82), Expect = 0.017
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 7/130 (5%)
Query: 4 PDYKLSAILNGHSMDVRSVAATKEF-CILSASRDRTAKLWHPEGVKEFVNVITYKGHRNF 62
P ++ + L GHS V SV + +L+AS D+T ++W G + T H
Sbjct: 252 PSGQILSTLTGHSKKVTSVKFVGDSDLVLTASADKTVRIWRNPGDGNYACGYTLNDHSAE 311
Query: 63 VSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTL-EGHENAVCSVSPGRDSGI 121
V + P F V+ S D T Y+L G+ L + + +N + + G+
Sbjct: 312 VRAVTVHPTNKYF-----VSASLDGTWCFYDLSSGSCLAQVSDDSKNVDYTAAAFHPDGL 366
Query: 122 LLSISINPAV 131
+L + +V
Sbjct: 367 ILGTGTSQSV 376
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 37.5 bits (83), Expect = 0.013
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Query: 47 VKEFVNVITYKGHRNFVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGH 106
++ F + ++ H+ IC + + + ++ TG D T + ++ G +L TL GH
Sbjct: 206 LERFTQLSSHPLHKTNKPGICSMD--ILHSKDVIATGGVDATAVLFDRPSGQILSTLTGH 263
Query: 107 ENAVCSVSPGRDSGILLSISINPAVQNGFATSGEGGSVRLWTGGDCIREIR 157
V SV DS ++L+ S + V+ + G+G +T D E+R
Sbjct: 264 SKKVTSVKFVGDSDLVLTASADKTVRI-WRNPGDGNYACGYTLNDHSAEVR 313
Score = 37.1 bits (82), Expect = 0.017
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 7/130 (5%)
Query: 4 PDYKLSAILNGHSMDVRSVAATKEF-CILSASRDRTAKLWHPEGVKEFVNVITYKGHRNF 62
P ++ + L GHS V SV + +L+AS D+T ++W G + T H
Sbjct: 252 PSGQILSTLTGHSKKVTSVKFVGDSDLVLTASADKTVRIWRNPGDGNYACGYTLNDHSAE 311
Query: 63 VSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTL-EGHENAVCSVSPGRDSGI 121
V + P F V+ S D T Y+L G+ L + + +N + + G+
Sbjct: 312 VRAVTVHPTNKYF-----VSASLDGTWCFYDLSSGSCLAQVSDDSKNVDYTAAAFHPDGL 366
Query: 122 LLSISINPAV 131
+L + +V
Sbjct: 367 ILGTGTSQSV 376
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 37.1 bits (82), Expect = 0.017
Identities = 48/188 (25%), Positives = 77/188 (40%), Gaps = 33/188 (17%)
Query: 7 KLSAILNGHSMDVRSVAATKEF-CILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSC 65
K + IL GH V + + L+ +DRT +LW+P + + TYK H V
Sbjct: 9 KEAHILKGHEGAVLAARFNGDGNYALTCGKDRTIRLWNPH---RGILIKTYKSHGREVRD 65
Query: 66 ICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSI 125
+ V+ + D + +++ G V+ GH+ V +V S +++S
Sbjct: 66 V-----HVTSDNAKFCSCGGDRQVYYWDVSTGRVIRKFRGHDGEVNAVKFNDSSSVVVS- 119
Query: 126 SINPAVQNGFATSGEGGSVRLWTGGDCIREIRLPVQ-------SVWSVTCLENGDIVTGS 178
+G S+R+W DC PVQ +V SV L +I+ GS
Sbjct: 120 ------------AGFDRSLRVW---DCRSHSVEPVQIIDTFLDTVMSVV-LTKTEIIGGS 163
Query: 179 SDGVIRVF 186
DG +R F
Sbjct: 164 VDGTVRTF 171
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 37.1 bits (82), Expect = 0.017
Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 18/181 (9%)
Query: 13 NGHSMDVRSVAA--TKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVP 70
+GHS V S A T+ F I++ D + EG F ++ + H NFV+C+ + P
Sbjct: 141 DGHSRRVLSCAIKPTRPFRIVTCGEDFLVNFY--EG-PPFKFKLSSREHSNFVNCVRFAP 197
Query: 71 PCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTL---EGHENAVCSVSPGRDSGILLSISI 127
F +T S+D + Y+ + +L L +GH+ ++ +VS D +L++S
Sbjct: 198 DGSKF-----ITVSSDKKGIIYDGKTCEILGELSSDDGHKGSIYAVSWSPDGKQVLTVSA 252
Query: 128 NPAVQNGFATSGEGGSVRLWTGGDCIREIRLPVQSVWSVTCL-ENGDIVTGSSDGVIRVF 186
+ + + + GS L T +C V + V CL +N IVT S G I +F
Sbjct: 253 DKSAK--IWDISDNGSGSLNTTLNCPGSSG-GVDDM-LVGCLWQNDHIVTVSLGGTISIF 308
Query: 187 T 187
+
Sbjct: 309 S 309
>At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 (4
significant) WD-40 repeats (PF0400); identical to WD-40
repeat protein MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 507
Score = 37.1 bits (82), Expect = 0.017
Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 17/141 (12%)
Query: 11 ILNGHSMDVRSVA----ATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCI 66
+ +GH V VA + +EFC S D LW V + K H + C+
Sbjct: 287 VYHGHEDTVEDVAFSPTSAQEFC--SVGDDSCLILWDARTGTNPVTKVE-KAHDADLHCV 343
Query: 67 CWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSIS 126
W P + L++TGS DNT+ ++ + LT G + + G + + L +
Sbjct: 344 DWNP----HDDNLILTGSADNTVRLFDRRK----LTANGVGSPIYKFE-GHKAAV-LCVQ 393
Query: 127 INPAVQNGFATSGEGGSVRLW 147
+P + F +S E G + +W
Sbjct: 394 WSPDKSSVFGSSAEDGLLNIW 414
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 37.1 bits (82), Expect = 0.017
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 12 LNGHSMDVRSVAA-TKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVP 70
L GH+ V SVA ++E +L+ + KLW E K V + GHR+ S + + P
Sbjct: 3 LCGHTSPVDSVAFNSEEVLVLAGASSGVIKLWDLEESKM---VRAFTGHRSNCSAVEFHP 59
Query: 71 PCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISINPA 130
F E L +GS+D + ++ + + T +GH + ++ D ++S ++
Sbjct: 60 ----FGEFLA-SGSSDTNLRVWDTRKKGCIQTYKGHTRGISTIEFSPDGRWVVSGGLDNV 114
Query: 131 VQNGFATSGE 140
V+ T+G+
Sbjct: 115 VKVWDLTAGK 124
Score = 30.3 bits (65), Expect = 1.9
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 11/113 (9%)
Query: 3 IPDYKLSAILNGHSMDVRSVAATK--EFCILSASRDRTAKLWHPEGVKEFVNVITYKGHR 60
+ + K+ GH + +V EF + S S D ++W ++ + TYKGH
Sbjct: 36 LEESKMVRAFTGHRSNCSAVEFHPFGEF-LASGSSDTNLRVWD---TRKKGCIQTYKGHT 91
Query: 61 NFVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSV 113
+S I + P VV+G DN + ++L G +L + HE + S+
Sbjct: 92 RGISTIEFSPD-----GRWVVSGGLDNVVKVWDLTAGKLLHEFKCHEGPIRSL 139
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 36.7 bits (81), Expect = 0.022
Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 16/138 (11%)
Query: 55 TYKGHRNFVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSV- 113
T+ GH+ V+C+ W P L+ + S+D+T +N++ T + L H + ++
Sbjct: 443 TFTGHQGEVNCVKWDP-----TGSLLASCSDDSTAKIWNIKQSTFVHDLREHTKEIYTIR 497
Query: 114 -SPGRDSGILLSISINPAVQNGFATSGEGGSVRLWTG--GDCIREIRLPVQSVWSVTCLE 170
SP + NP Q A++ +V+LW G + + V+S+
Sbjct: 498 WSPTGPG------TNNPNKQLTLASASFDSTVKLWDAELGKMLCSFNGHREPVYSLAFSP 551
Query: 171 NGD-IVTGSSDGVIRVFT 187
NG+ I +GS D I +++
Sbjct: 552 NGEYIASGSLDKSIHIWS 569
Score = 33.1 bits (72), Expect = 0.27
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 26 KEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPPCVSFPEGLVVTGSN 85
K+ + SAS D T KLW E K + ++ GHR V + + P + +GS
Sbjct: 510 KQLTLASASFDSTVKLWDAELGK---MLCSFNGHREPVYSLAFSP-----NGEYIASGSL 561
Query: 86 DNTILGYNLQDGTVLLTLEGH 106
D +I +++++G ++ T G+
Sbjct: 562 DKSIHIWSIKEGKIVKTYTGN 582
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 36.7 bits (81), Expect = 0.022
Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 11/115 (9%)
Query: 14 GHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPPCV 73
GH+ +V ++ +K+ +LSAS D+T +LW G + + V H ++V+ + + P
Sbjct: 326 GHTGEVLDISWSKDNYLLSASMDKTVRLW-KVGSNDCLGVF---AHNSYVTSVQFNP--- 378
Query: 74 SFPEGLVVTGSNDNTILGYNLQDGTVL--LTLEGHENAVCSVSPGRDSGILLSIS 126
E ++GS D + +N+ +V+ L+ +AVC P GI+ S++
Sbjct: 379 -VNENYFMSGSIDGKVRIWNISGCSVVDWADLKDIISAVC-YRPDGQGGIIGSLN 431
Score = 35.1 bits (77), Expect = 0.068
Identities = 41/180 (22%), Positives = 77/180 (42%), Gaps = 15/180 (8%)
Query: 77 EGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISINPAVQNGFA 136
E L ++ S DN +L ++ D TV L G + + + + + S+ NP +N F
Sbjct: 330 EVLDISWSKDNYLLSASM-DKTVRLWKVGSNDCLGVFA---HNSYVTSVQFNPVNENYFM 385
Query: 137 TSGEGGSVRLWTGGDCIREIRLPVQSVWSVTCLE---NGDIVTGSSDGVIRVFTKDPARF 193
+ G VR+W C ++ + S C G I+ GS +G R F F
Sbjct: 386 SGSIDGKVRIWNISGCSVVDWADLKDIISAVCYRPDGQGGII-GSLNGSCRFFNMS-GEF 443
Query: 194 ADEETIKNFEEEVEKIQASSEQEIGGFKVSELPGPEVLLEPGKSDGQTKLVRRGAAVKCY 253
+ ++ + + + SS + I GF+ +VL+ +D + ++++ V+ Y
Sbjct: 444 LELDS----QIHLHNKKKSSNKRITGFQFLPQEPTKVLVV--SADSKVRILQGNNVVRKY 497
>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 709
Score = 36.3 bits (80), Expect = 0.029
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 14 GHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVP 70
GH+ ++ ++ +++ +LS+S D T +LW E + V + H++FV+C+ + P
Sbjct: 361 GHTGEILDLSWSEKGFLLSSSVDETVRLWRVGSSDECIRVFS---HKSFVTCVAFNP 414
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 36.3 bits (80), Expect = 0.029
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 14 GHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPPCV 73
GH DV +A +K +LS+S D+T +LW+ + + V + H ++V+CI + P
Sbjct: 511 GHVDDVLDLAWSKSQHLLSSSMDKTVRLWNLSS-QTCLKVFS---HSDYVTCIQFNP--- 563
Query: 74 SFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILL 123
+ ++GS D + +++ D V+ + HE + G+L+
Sbjct: 564 -VDDRYFISGSLDAKVRVWSIPDRQVVDWYDLHEMVTSACYTPDGQGVLV 612
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 36.3 bits (80), Expect = 0.029
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 12 LNGHSMDVRSVAA-TKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVP 70
L GH+ V SVA + E +L+ + KLW E K V + GHR+ S + + P
Sbjct: 54 LCGHTSAVDSVAFDSAEVLVLAGASSGVIKLWDVEEAKM---VRAFTGHRSNCSAVEFHP 110
Query: 71 PCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISINPA 130
F E L +GS+D + ++++ + T +GH + ++ D ++S ++
Sbjct: 111 ----FGEFLA-SGSSDANLKIWDIRKKGCIQTYKGHSRGISTIRFTPDGRWVVSGGLDNV 165
Query: 131 VQNGFATSGE 140
V+ T+G+
Sbjct: 166 VKVWDLTAGK 175
Score = 34.7 bits (76), Expect = 0.089
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 11/113 (9%)
Query: 3 IPDYKLSAILNGHSMDVRSVAATK--EFCILSASRDRTAKLWHPEGVKEFVNVITYKGHR 60
+ + K+ GH + +V EF + S S D K+W +++ + TYKGH
Sbjct: 87 VEEAKMVRAFTGHRSNCSAVEFHPFGEF-LASGSSDANLKIWD---IRKKGCIQTYKGHS 142
Query: 61 NFVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSV 113
+S I + P VV+G DN + ++L G +L + HE + S+
Sbjct: 143 RGISTIRFTPD-----GRWVVSGGLDNVVKVWDLTAGKLLHEFKFHEGPIRSL 190
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 35.9 bits (79), Expect = 0.039
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 11/113 (9%)
Query: 3 IPDYKLSAILNGHSMDVRSVAATK--EFCILSASRDRTAKLWHPEGVKEFVNVITYKGHR 60
+ + K+ L GH + SV EF S S D K+W +++ + TYKGH
Sbjct: 88 LEEAKIVRTLTGHRSNCISVDFHPFGEF-FASGSLDTNLKIWD---IRKKGCIHTYKGHT 143
Query: 61 NFVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSV 113
V+ + + P VV+G DN + ++L G +L + HE + S+
Sbjct: 144 RGVNVLRFTPD-----GRWVVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSL 191
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 35.9 bits (79), Expect = 0.039
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 11/113 (9%)
Query: 3 IPDYKLSAILNGHSMDVRSVAATK--EFCILSASRDRTAKLWHPEGVKEFVNVITYKGHR 60
+ + K+ L GH + SV EF S S D K+W +++ + TYKGH
Sbjct: 88 LEEAKIVRTLTGHRSNCISVDFHPFGEF-FASGSLDTNLKIWD---IRKKGCIHTYKGHT 143
Query: 61 NFVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSV 113
V+ + + P VV+G DN + ++L G +L + HE + S+
Sbjct: 144 RGVNVLRFTPD-----GRWVVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSL 191
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 35.9 bits (79), Expect = 0.039
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 40 KLWHPEGVKEFVNVITYKGHRN--FVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDG 97
+LW+ EG + V+ YKGH+ F+ C+ + + + +GS D+ + ++ G
Sbjct: 468 RLWNIEGDPKIVS--RYKGHKRSRFIIRSCFG----GYKQAFIASGSEDSQVYIWHRSTG 521
Query: 98 TVLLTLEGHENAVCSVS 114
+++ L GH AV VS
Sbjct: 522 KLIVELPGHAGAVNCVS 538
Score = 31.5 bits (68), Expect = 0.83
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 5 DYKLSAILNGHSMD---VRSV-AATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHR 60
D K+ + GH +RS K+ I S S D +WH K V + GH
Sbjct: 475 DPKIVSRYKGHKRSRFIIRSCFGGYKQAFIASGSEDSQVYIWHRSTGKLIVEL---PGHA 531
Query: 61 NFVSCICWVPPCVSFPEGLVVTGSNDNTI 89
V+C+ W P + ++ + S+D TI
Sbjct: 532 GAVNCVSWSPTNLH----MLASASDDGTI 556
>At3g01340.1 68416.m00051 protein transport protein SEC13 family
protein / WD-40 repeat family protein similar to Protein
transport protein SEC13 SP|Q04491 {Saccharomyces
cerevisiae} and SEC13 (SP:P53024) [Pichia pastoris]
Length = 302
Score = 35.9 bits (79), Expect = 0.039
Identities = 58/224 (25%), Positives = 93/224 (41%), Gaps = 26/224 (11%)
Query: 10 AILNGHSMDVRSVA-ATKEF--CILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCI 66
A L GH V VA A +F + S S D LW ++ + H+ V+ I
Sbjct: 50 ATLTGHRGPVWQVAWAHPKFGSLLASCSYDGQIILWKEGNQNQWTQAHVFTDHKVSVNSI 109
Query: 67 CWVPPCVSFPEGLVVTGSNDNTILGYNLQ-DGTVLLTL--EGHENAVCSVS--PGRDSGI 121
W P + + G++D I ++ + DG T + H V SVS P + G
Sbjct: 110 AWAPHELGLS---LACGASDGNISVFSARADGGWDTTKIDQAHPVGVTSVSWAPATEPGA 166
Query: 122 LLSIS-INPAVQNGFATSGEGGSVRLW--TGG----DCIREIRLPVQSV----WSVTC-L 169
L+S I+P + A+ G +V++W + G DC + V W+ L
Sbjct: 167 LVSSGMIDPVYK--LASGGCDSTVKVWKFSNGSWKMDCFPALNKHTDWVRDVAWAPNLGL 224
Query: 170 ENGDIVTGSSDGVIRVFTKDPARFADEETI-KNFEEEVEKIQAS 212
I +GS DG + ++T E T+ K+F+ V ++ S
Sbjct: 225 PKSTIASGSEDGKVIIWTIGKEGEQWEGTVLKDFKTPVWRVSWS 268
>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 825
Score = 35.5 bits (78), Expect = 0.051
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 10/106 (9%)
Query: 14 GHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPPCV 73
GH DV ++ +K +LS+S D+T +LW K + V + H ++V+CI + P
Sbjct: 466 GHLDDVLDLSWSKSQHLLSSSMDKTVRLWDLSS-KTCLKVFS---HSDYVTCIQFNP--- 518
Query: 74 SFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHE--NAVCSVSPGR 117
+ ++GS D + +++ D V+ + HE A C G+
Sbjct: 519 -VDDNYFISGSLDAKVRIWSIPDHQVVDWNDLHEMVTAACYTPDGQ 563
>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); rab11 binding protein, Bos
taurus, EMBL:AF117897
Length = 905
Score = 35.5 bits (78), Expect = 0.051
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 14 GHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPPCV 73
GH DV ++ ++ +LS+S D+T +LW E + + H ++V+C+ + P
Sbjct: 517 GHLDDVLDLSWSRSQLLLSSSMDKTVRLWD----IETQSCLKLFAHNDYVTCVQFNP--- 569
Query: 74 SFPEGLVVTGSNDNTILGYNLQDGTVL--LTLEGHENAVCSVSPGR 117
E ++GS D I +N+ + V+ L+ AVC G+
Sbjct: 570 -LDEDYFISGSLDAKIRIWNISNRQVVEWNDLKEMVTAVCYTPDGQ 614
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 35.5 bits (78), Expect = 0.051
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 12/111 (10%)
Query: 7 KLSAILNGHSMDVRSV--AATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVS 64
KL L GH+M VRS+ + + S S D + EG K + ++ GH +
Sbjct: 191 KLLHQLEGHNMPVRSLVFSPVDPRVLFSGSDDGHVNMHDAEG-KTLLGSMS--GHTS--- 244
Query: 65 CICWVPPCVSFPEG-LVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVS 114
WV + P+G + TGS+D T+ ++L+ + T+ H + V SV+
Sbjct: 245 ---WVLSVDASPDGGAIATGSSDRTVRLWDLKMRAAIQTMSNHNDQVWSVA 292
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 59 HRNFVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRD 118
H + V WVP P L++TGS D T+ + + ++ T GH V +++
Sbjct: 13 HEDSVWAATWVPATEDRP-ALLLTGSLDETVKLWRPDELDLVRTNTGHSLGVAALA-AHP 70
Query: 119 SGILLSIS 126
SGI+ + S
Sbjct: 71 SGIIAASS 78
Score = 29.1 bits (62), Expect = 4.4
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 8 LSAILNGHSMDVRS---VAATKE--FCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNF 62
L +I N H V + V AT++ +L+ S D T KLW P+ E V T GH
Sbjct: 6 LKSIENAHEDSVWAATWVPATEDRPALLLTGSLDETVKLWRPD---ELDLVRTNTGHSLG 62
Query: 63 VSCICWVPPCVSFPEGLVVTGSN-DNTILGYNLQDGTVLLTLEGHENAV 110
V+ + + P G++ S+ D+ + +++ + LE + V
Sbjct: 63 VAAL------AAHPSGIIAASSSIDSFVRVFDVDTNATIAVLEAPPSEV 105
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 35.5 bits (78), Expect = 0.051
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 12 LNGHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPP 71
+ G S VR T +F L+A+ + T ++ E + VN+ +KGH + V +CW
Sbjct: 631 VKGASTQVRFQPRTGQF--LAAASENTVSIFDIENNNKRVNI--FKGHSSNVHSVCW--- 683
Query: 72 CVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSV 113
P G +V +++ + ++L G + L N SV
Sbjct: 684 ---SPNGELVASVSEDAVKLWSLSSGDCIHELSNSGNKFHSV 722
Score = 31.5 bits (68), Expect = 0.83
Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 9/122 (7%)
Query: 11 ILNGHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVP 70
I GHS +V SV + ++++ + KLW + ++ ++ G++ F S + + P
Sbjct: 670 IFKGHSSNVHSVCWSPNGELVASVSEDAVKLWSLSS-GDCIHELSNSGNK-FHS-VVFHP 726
Query: 71 PCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISINPA 130
S+P+ LV+ G I +N + +T+ GHE + +++ +G++ S S + +
Sbjct: 727 ---SYPDLLVIGGY--QAIELWNTMENK-CMTVAGHECVISALAQSPSTGVVASASHDKS 780
Query: 131 VQ 132
V+
Sbjct: 781 VK 782
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 35.5 bits (78), Expect = 0.051
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 12 LNGHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPP 71
+ G S VR T +F L+A+ + T ++ E + VN+ +KGH + V +CW
Sbjct: 633 VKGASTQVRFQPRTGQF--LAAASENTVSIFDIENNNKRVNI--FKGHSSNVHSVCW--- 685
Query: 72 CVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSV 113
P G +V +++ + ++L G + L N SV
Sbjct: 686 ---SPNGELVASVSEDAVKLWSLSSGDCIHELSNSGNKFHSV 724
Score = 31.5 bits (68), Expect = 0.83
Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 9/122 (7%)
Query: 11 ILNGHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVP 70
I GHS +V SV + ++++ + KLW + ++ ++ G++ F S + + P
Sbjct: 672 IFKGHSSNVHSVCWSPNGELVASVSEDAVKLWSLSS-GDCIHELSNSGNK-FHS-VVFHP 728
Query: 71 PCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISINPA 130
S+P+ LV+ G I +N + +T+ GHE + +++ +G++ S S + +
Sbjct: 729 ---SYPDLLVIGGY--QAIELWNTMENK-CMTVAGHECVISALAQSPSTGVVASASHDKS 782
Query: 131 VQ 132
V+
Sbjct: 783 VK 784
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 35.5 bits (78), Expect = 0.051
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 12 LNGHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPP 71
+ G S VR T +F L+A+ + T ++ E + VN+ +KGH + V +CW
Sbjct: 633 VKGASTQVRFQPRTGQF--LAAASENTVSIFDIENNNKRVNI--FKGHSSNVHSVCW--- 685
Query: 72 CVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSV 113
P G +V +++ + ++L G + L N SV
Sbjct: 686 ---SPNGELVASVSEDAVKLWSLSSGDCIHELSNSGNKFHSV 724
Score = 31.5 bits (68), Expect = 0.83
Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 9/122 (7%)
Query: 11 ILNGHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVP 70
I GHS +V SV + ++++ + KLW + ++ ++ G++ F S + + P
Sbjct: 672 IFKGHSSNVHSVCWSPNGELVASVSEDAVKLWSLSS-GDCIHELSNSGNK-FHS-VVFHP 728
Query: 71 PCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISINPA 130
S+P+ LV+ G I +N + +T+ GHE + +++ +G++ S S + +
Sbjct: 729 ---SYPDLLVIGGY--QAIELWNTMENK-CMTVAGHECVISALAQSPSTGVVASASHDKS 782
Query: 131 VQ 132
V+
Sbjct: 783 VK 784
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 35.5 bits (78), Expect = 0.051
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 12 LNGHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPP 71
+ G S VR T +F L+A+ + T ++ E + VN+ +KGH + V +CW
Sbjct: 633 VKGASTQVRFQPRTGQF--LAAASENTVSIFDIENNNKRVNI--FKGHSSNVHSVCW--- 685
Query: 72 CVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSV 113
P G +V +++ + ++L G + L N SV
Sbjct: 686 ---SPNGELVASVSEDAVKLWSLSSGDCIHELSNSGNKFHSV 724
Score = 31.5 bits (68), Expect = 0.83
Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 9/122 (7%)
Query: 11 ILNGHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVP 70
I GHS +V SV + ++++ + KLW + ++ ++ G++ F S + + P
Sbjct: 672 IFKGHSSNVHSVCWSPNGELVASVSEDAVKLWSLSS-GDCIHELSNSGNK-FHS-VVFHP 728
Query: 71 PCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISINPA 130
S+P+ LV+ G I +N + +T+ GHE + +++ +G++ S S + +
Sbjct: 729 ---SYPDLLVIGGY--QAIELWNTMENK-CMTVAGHECVISALAQSPSTGVVASASHDKS 782
Query: 131 VQ 132
V+
Sbjct: 783 VK 784
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 35.5 bits (78), Expect = 0.051
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 12 LNGHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPP 71
+ G S VR T +F L+A+ + T ++ E + VN+ +KGH + V +CW
Sbjct: 633 VKGASTQVRFQPRTGQF--LAAASENTVSIFDIENNNKRVNI--FKGHSSNVHSVCW--- 685
Query: 72 CVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSV 113
P G +V +++ + ++L G + L N SV
Sbjct: 686 ---SPNGELVASVSEDAVKLWSLSSGDCIHELSNSGNKFHSV 724
Score = 31.5 bits (68), Expect = 0.83
Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 9/122 (7%)
Query: 11 ILNGHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVP 70
I GHS +V SV + ++++ + KLW + ++ ++ G++ F S + + P
Sbjct: 672 IFKGHSSNVHSVCWSPNGELVASVSEDAVKLWSLSS-GDCIHELSNSGNK-FHS-VVFHP 728
Query: 71 PCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISINPA 130
S+P+ LV+ G I +N + +T+ GHE + +++ +G++ S S + +
Sbjct: 729 ---SYPDLLVIGGY--QAIELWNTMENK-CMTVAGHECVISALAQSPSTGVVASASHDKS 782
Query: 131 VQ 132
V+
Sbjct: 783 VK 784
>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
family protein similar to Transcriptional repressor
rco-1 (SP:P78706) [Neurospora crassa]; similar to
TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
Length = 648
Score = 35.5 bits (78), Expect = 0.051
Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 35/200 (17%)
Query: 12 LNGHSMDVRSVAATKEFC-ILSASRDRTAKLWHPEGV----KEFVNVITYKGHRNFVSCI 66
L GH+ V S+A +LS S D T +++ +G+ + F + +GH+ V +
Sbjct: 173 LKGHTKIVSSLAVDSAGARVLSGSYDYTVRMYDFQGMNSRLQSFRQIEPSEGHQ--VRSV 230
Query: 67 CWVPPCVSFPEGLVVTGS-------NDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDS 119
W P F L VTGS D LG ++ + L+ + +C ++ G
Sbjct: 231 SWSPTSGQF---LCVTGSAQAKIFDRDGLTLGEFMKGDMYIRDLKNTKGHICGLTCGE-- 285
Query: 120 GILLSISINPAVQNGFATSGEGGSVRLWTGGDCIREIRL--PVQS----VWSVTCLENGD 173
+P + TS E GS+R+W + + + ++ P + V TC + D
Sbjct: 286 -------WHPRTKETVLTSSEDGSLRIWDVNNFLSQTQVIKPKLARPGRVPVTTCAWDRD 338
Query: 174 ---IVTGSSDGVIRVFTKDP 190
I G DG I++++ P
Sbjct: 339 GKRIAGGVGDGSIQIWSLKP 358
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 35.5 bits (78), Expect = 0.051
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 31 LSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPPCVSFPEGLVVTGSNDNTIL 90
+S S D K+W P ++ T KGH V I S G +V+GS+D +++
Sbjct: 871 ISGSTDCLVKIWDPS-LRGSELRATLKGHTGTVRAI-------SSDRGKIVSGSDDLSVI 922
Query: 91 GYNLQDGTVLLTLEGHENAVCSV 113
++ Q +L L+GH++ V V
Sbjct: 923 VWDKQTTQLLEELKGHDSQVSCV 945
Score = 35.1 bits (77), Expect = 0.068
Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 32/209 (15%)
Query: 7 KLSAILNGHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCI 66
+L A L GH+ VR++++ + I+S S D + +W + + + KGH + VSC+
Sbjct: 890 ELRATLKGHTGTVRAISSDRGK-IVSGSDDLSVIVWDKQTTQLLEEL---KGHDSQVSCV 945
Query: 67 CWVPP---CVSFPEGLV------------VTGSNDNTILGYNLQDGTVLLTLEGHENA-- 109
+ + +G V G + IL D T +L G +
Sbjct: 946 KMLSGERVLTAAHDGTVKMWDVRTDMCVATVGRCSSAILSLEYDDSTGILAAAGRDTVAN 1005
Query: 110 VCSVSPGRD----SGILLSISINPAVQNGFATSGEGGSVRLWT--GGDCIREIRL---PV 160
+ + G+ G I V++ T + + R+W+ G C + PV
Sbjct: 1006 IWDIRSGKQMHKLKGHTKWIRSIRMVEDTLITGSDDWTARVWSVSRGSCDAVLACHAGPV 1065
Query: 161 QSVWSVTCLENGDIVTGSSDGVIRVFTKD 189
QSV + + G I+TGS+DG++R + D
Sbjct: 1066 QSV-EYSPFDKG-IITGSADGLLRFWEND 1092
Score = 35.1 bits (77), Expect = 0.068
Identities = 40/161 (24%), Positives = 68/161 (42%), Gaps = 28/161 (17%)
Query: 30 ILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPPCVSFPEGLVVTGSNDNTI 89
+ +A RD A +W K+ + KGH ++ I V E ++TGS+D T
Sbjct: 995 LAAAGRDTVANIWDIRSGKQMHKL---KGHTKWIRSIRMV-------EDTLITGSDDWTA 1044
Query: 90 LGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISINPAVQNGFATSGEGGSVRLW-- 147
+++ G+ L H +G + S+ +P G T G +R W
Sbjct: 1045 RVWSVSRGSCDAVLACH------------AGPVQSVEYSP-FDKGIITGSADGLLRFWEN 1091
Query: 148 -TGG-DCIREIRLPVQSVWSVTCLENGDIVTGSSDGVIRVF 186
GG C++ I L S+ S+ EN + G++D + +F
Sbjct: 1092 DEGGIKCVKNITLHSSSILSINAGENW-LGIGAADNSMSLF 1131
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 35.1 bits (77), Expect = 0.068
Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 17/157 (10%)
Query: 3 IPDYKLSAILNGHSMDVRSVAATK--EFCILSASRDRTAKLWHPEGVKEFVNVITYKGHR 60
+ + K+ L GH + SV EF S S D K+W +++ + TYKGH
Sbjct: 181 LEEAKVVRTLTGHRSNCVSVNFHPFGEF-FASGSLDTNLKIWD---IRKKGCIHTYKGHT 236
Query: 61 NFVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSG 120
V+ + + P +V+G DN + ++L G +L + HE + S+
Sbjct: 237 RGVNVLRFTPD-----GRWIVSGGEDNVVKVWDLTAGKLLHEFKSHEGKIQSLDFHPHEF 291
Query: 121 ILLSISINPAVQ----NGFATSGEGGSVRLWTGGDCI 153
+L + S + V+ F G GG+ TG C+
Sbjct: 292 LLATGSADKTVKFWDLETFELIGSGGTET--TGVRCL 326
Score = 31.5 bits (68), Expect = 0.83
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 77 EGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVS 114
EGLV G+ TI ++L++ V+ TL GH + SV+
Sbjct: 164 EGLVAAGAASGTIKLWDLEEAKVVRTLTGHRSNCVSVN 201
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 35.1 bits (77), Expect = 0.068
Identities = 38/171 (22%), Positives = 71/171 (41%), Gaps = 16/171 (9%)
Query: 5 DYKLSAILNGHSMDVRSVAATKE-FCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFV 63
+++ + L GH +V+SV+ C+ + SRD++ +W E+ GH V
Sbjct: 107 EFECISTLEGHENEVKSVSWNASGSCLATCSRDKSVWIWEVLEGNEYDCAAVLTGHTQDV 166
Query: 64 SCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRD--SGI 121
+ W P ++ + S DNTI + +D +G V ++ + S
Sbjct: 167 KMVQWHPTM-----DVLFSCSYDNTIKVWWSEDD------DGEYQCVQTLGESNNGHSST 215
Query: 122 LLSISINPAVQNGFATSGEGGSVRLWTGGDCIREIRLPVQSVWSVTCLENG 172
+ SIS N A + T + ++++W G D + + W C +G
Sbjct: 216 VWSISFN-AAGDKMVTCSDDLTLKIW-GTDIAKMQSGEEYAPWIHLCTLSG 264
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 35.1 bits (77), Expect = 0.068
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 14/138 (10%)
Query: 13 NGHSMDVRSVA--ATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVP 70
+GHS V S A T+ F I + D + K F + +++ H NFV+CI + P
Sbjct: 5 DGHSRRVLSCAFKPTRPFRIATCGEDFLVNFYDGPPFK-FHS--SHREHSNFVNCIRYSP 61
Query: 71 PCVSFPEGLVVTGSNDNTILGYNLQDGT---VLLTLEGHENAVCSVSPGRDSGILLSISI 127
F +T S+D + Y+ + G L + +GH+ ++ +VS DS +L++S
Sbjct: 62 DGTKF-----ITVSSDKKGMIYDGKTGDKVGELASEDGHKGSIYAVSWSPDSKRVLTVSA 116
Query: 128 NPAVQN-GFATSGEGGSV 144
+ + + A G GSV
Sbjct: 117 DKSAKVWEVAEDGTIGSV 134
>At5g50120.1 68418.m06207 transducin family protein / WD-40 repeat
family protein Similar to En/Spm-like transposon protein
(gi:2739374)[Arabidopsis thaliana]; similar to
GTP-binding regulatory protein and WD-repeat protein;
contains 7 WD-40 repeats
Length = 388
Score = 34.7 bits (76), Expect = 0.089
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 165 SVTCLENGDIVTGSSDGVIRVFTKDPARFADEETIKNFEEEVEKIQASSEQEIGGFKVSE 224
+V ENGDI TGSSD I+V+ K+ +EE +K ++ + A + G
Sbjct: 213 AVALSENGDIYTGSSDQRIKVWRKN----INEENVK--KKRKHSLVAILSEHNSGINALA 266
Query: 225 LPGPE-VLLEPGKSDG 239
L G LL G SDG
Sbjct: 267 LSGTNGSLLHSGGSDG 282
Score = 29.5 bits (63), Expect = 3.4
Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 14/146 (9%)
Query: 5 DYK-LSAILNGHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFV 63
D+K L + N H + +VA ++ I + S D+ K+W + + E NV + H
Sbjct: 196 DFKCLESFTNAHDDAINAVALSENGDIYTGSSDQRIKVWR-KNINE-ENVKKKRKH---- 249
Query: 64 SCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLL--TLEGHENAVCSVSPGRDSGI 121
S + + S L ++G+N ++L DG++L+ +G + V + G +
Sbjct: 250 SLVAILSEHNSGINALALSGTN-GSLLHSGGSDGSILVWERDDGGDIVVVGMLRGHTESV 308
Query: 122 LLSISINPAVQNGFATSGEGGSVRLW 147
L ++ + +G A +VRLW
Sbjct: 309 LCLAVVSDILCSGSADK----TVRLW 330
>At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1)
identical to phytochrome A supressor spa1 (GI:4809171)
[Arabidopsis thaliana]; contains 8 WD-40 repeats (Pfam
PF00400) (1 weak)
Length = 1029
Score = 34.7 bits (76), Expect = 0.089
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 12 LNGHSMDVRSVAATKEFCILSASRDRTAKLW-----HPEGVKEFVNVITYKGHRNFVSCI 66
L GH V V I+SAS D + KLW + G+ +TYKGH N + +
Sbjct: 890 LAGHEKAVSYVKFMDSETIVSASTDNSLKLWNLNKTNSSGLSPGACSLTYKGHTNQKNFV 949
Query: 67 CWVPPCVSFPEGLVVTGSNDNTILGY 92
+S +G + GS N + Y
Sbjct: 950 -----GLSVLDGYIACGSETNEVYSY 970
>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 34.7 bits (76), Expect = 0.089
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 14 GHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVP 70
GH ++ ++ +++ +LS+S D T +LW G E + T H NFV+C+ + P
Sbjct: 320 GHIGEILDLSWSEKGYLLSSSVDETVRLWR-VGCDECLRTFT---HNNFVTCVAFNP 372
>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 34.7 bits (76), Expect = 0.089
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 14 GHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVP 70
GH ++ ++ +++ +LS+S D T +LW G E + T H NFV+C+ + P
Sbjct: 320 GHIGEILDLSWSEKGYLLSSSVDETVRLWR-VGCDECLRTFT---HNNFVTCVAFNP 372
>At2g30050.1 68415.m03654 transducin family protein / WD-40 repeat
family protein similar to SEC13-related protein
(SP:P55735) [Homo sapiens]
Length = 302
Score = 34.3 bits (75), Expect = 0.12
Identities = 50/197 (25%), Positives = 78/197 (39%), Gaps = 23/197 (11%)
Query: 10 AILNGHSMDVRSVA-ATKEF--CILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCI 66
A L GH V VA A ++ + S S D LW ++ + H++ V+ I
Sbjct: 50 ATLTGHRGPVWEVAWAHPKYGSILASCSYDGQVILWKEGNQNQWTQDHVFTDHKSSVNSI 109
Query: 67 CWVPPCVSFPEGLVVTGSNDNTILGYNLQ-DG--TVLLTLEGHENAVCSVS--PGRDSGI 121
W P + + GS+D I + + DG + H V SVS P G
Sbjct: 110 AWAPHDIGLS---LACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPATAPGA 166
Query: 122 LLSISINPAVQNGFATSGEGGSVRLW--TGG----DCIREIRLPVQSV----WSVTC-LE 170
L+S + V A+ G +V++W G DC ++ V W+ L
Sbjct: 167 LVSSGLLDPVYK-LASGGCDNTVKVWKLANGSWKMDCFPALQKHTDWVRDVAWAPNLGLP 225
Query: 171 NGDIVTGSSDGVIRVFT 187
I +GS DG + ++T
Sbjct: 226 KSTIASGSQDGKVIIWT 242
>At1g49450.1 68414.m05543 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 471
Score = 34.3 bits (75), Expect = 0.12
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 72 CVSFPE--GLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRD 118
C+S E GL+ +GS D T+ + L D L ++E H++AV +V G D
Sbjct: 250 CLSLNEDLGLLYSGSWDKTLKVWRLSDSKCLESIEAHDDAVNTVVSGFD 298
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 33.9 bits (74), Expect = 0.16
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 58 GHRNFVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGR 117
GH V + W P + L+V+G D + ++ + G L +L GH+N V SV +
Sbjct: 266 GHGWDVKSVDWHPT-----KSLLVSGGKDQLVKLWDTRSGRELCSLHGHKNIVLSVKWNQ 320
Query: 118 DSGILLSIS 126
+ LL+ S
Sbjct: 321 NGNWLLTAS 329
Score = 33.9 bits (74), Expect = 0.16
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 18/111 (16%)
Query: 12 LNGHSMDVRSVAATKEF-CILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVP 70
L+GH V SV + +L+AS+D+ KL+ +KE + ++GH V+ + W
Sbjct: 306 LHGHKNIVLSVKWNQNGNWLLTASKDQIIKLYDIRTMKELQS---FRGHTKDVTSLAW-H 361
Query: 71 PCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGI 121
PC E V+GS+D G++ + GHEN + D+ +
Sbjct: 362 PC---HEEYFVSGSSD----------GSICHWIVGHENPQIEIPNAHDNSV 399
>At4g01860.2 68417.m00244 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 33.9 bits (74), Expect = 0.16
Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 17/171 (9%)
Query: 12 LNGHSMDV-RSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVP 70
L GH + R V + I+S S DR+A++W + +E V + + GH S W
Sbjct: 231 LTGHEGSIFRIVWSLDGSKIVSVSDDRSARIWEIDS-QEVVGPVLF-GH----SVRVW-D 283
Query: 71 PCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGH-ENAVCSVSPGRDSGILLSISINP 129
C+S + L+VT D T + + DGT L ++ H + +S +L++ +
Sbjct: 284 CCIS--DSLIVTAGEDCTCRVWGV-DGTQLEVIKEHIGRGIWRCLYDPNSSLLVTAGFDS 340
Query: 130 AVQNGFATSGEGGSVRLWTGGDCIREIRLPVQSVWSVTCLENGDIVTGSSD 180
A++ G L D + + P + + TCL N TG +D
Sbjct: 341 AIK-VHQLHNRGSETSL----DAVGVLNSPDKLEYFSTCLPNSTKHTGLTD 386
>At4g01860.1 68417.m00243 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 33.9 bits (74), Expect = 0.16
Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 17/171 (9%)
Query: 12 LNGHSMDV-RSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVP 70
L GH + R V + I+S S DR+A++W + +E V + + GH S W
Sbjct: 231 LTGHEGSIFRIVWSLDGSKIVSVSDDRSARIWEIDS-QEVVGPVLF-GH----SVRVW-D 283
Query: 71 PCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGH-ENAVCSVSPGRDSGILLSISINP 129
C+S + L+VT D T + + DGT L ++ H + +S +L++ +
Sbjct: 284 CCIS--DSLIVTAGEDCTCRVWGV-DGTQLEVIKEHIGRGIWRCLYDPNSSLLVTAGFDS 340
Query: 130 AVQNGFATSGEGGSVRLWTGGDCIREIRLPVQSVWSVTCLENGDIVTGSSD 180
A++ G L D + + P + + TCL N TG +D
Sbjct: 341 AIK-VHQLHNRGSETSL----DAVGVLNSPDKLEYFSTCLPNSTKHTGLTD 386
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 33.9 bits (74), Expect = 0.16
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 47 VKEFVNVITYKGHRNFVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGH 106
V+ + V+T +GH V + W P + ++ +GS DNT+ +N++ G L GH
Sbjct: 105 VENWKAVMTLRGHTADVVDLNWSPD-----DSMLASGSLDNTVHIWNMRTGMCTTVLRGH 159
Query: 107 ENAVCSVS 114
+ V V+
Sbjct: 160 LSLVKGVT 167
>At3g18950.1 68416.m02405 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 473
Score = 33.9 bits (74), Expect = 0.16
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 72 CVSFPE--GLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRD 118
C+S E GL+ +GS D T+ + L D L +++ H++A+ +V+ G D
Sbjct: 254 CLSLNEELGLLYSGSWDKTLKVWRLSDSKCLESIQAHDDAINTVAAGFD 302
Score = 33.9 bits (74), Expect = 0.16
Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 18/123 (14%)
Query: 3 IPDYKLSAILNGHSMDVRSVAATKEFCILSASRDRTAKLWHPE----GVKEFVNVITYKG 58
+ D K + H + +VAA + + + S D T K+W E G K F+ + K
Sbjct: 278 LSDSKCLESIQAHDDAINTVAAGFDDLLFTGSADGTLKVWKRELQGKGTKHFLVNVLMK- 336
Query: 59 HRNFVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLL----TLEGHENAV-CSV 113
N V+ + V+ +V GS+D T+ N +G L TL GH AV C
Sbjct: 337 QENAVTAL-----AVNITAAVVYCGSSDGTV---NFWEGQKYLSHGGTLRGHRLAVLCLA 388
Query: 114 SPG 116
+ G
Sbjct: 389 AAG 391
>At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400);
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]
Length = 837
Score = 33.9 bits (74), Expect = 0.16
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 14 GHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVN---VITYKGHRNFVSCICWVP 70
GHS V V ++S+S D T KLW +N + ++ GH N + +
Sbjct: 702 GHSKTVSYVKFVDSSTLVSSSTDNTLKLWDLSMSASGINESPLHSFTGHTNLKNFV---- 757
Query: 71 PCVSFPEGLVVTGSNDNTILGYN 93
+S +G + TGS N + Y+
Sbjct: 758 -GLSVSDGYIATGSETNEVFVYH 779
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 33.9 bits (74), Expect = 0.16
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 11 ILNGHSMDVRSVAATKEFCIL-SASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWV 69
++ GH + + +E +L S ++D T LW + + TY+GH V C C
Sbjct: 5 LMKGHERPLTFLRYNREGDLLFSCAKDHTPTLWFADNGERLG---TYRGHNGAVWC-C-- 58
Query: 70 PPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLE 104
VS ++TGS D T ++++ G L T +
Sbjct: 59 --DVSRDSSRLITGSADQTAKLWDVKSGKELFTFK 91
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 33.9 bits (74), Expect = 0.16
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 11 ILNGHSMDVRSVAATKEFCIL-SASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWV 69
++ GH + + +E +L S ++D T LW + + TY+GH V C C
Sbjct: 5 LMKGHERPLTFLRYNREGDLLFSCAKDHTPTLWFADNGERLG---TYRGHNGAVWC-C-- 58
Query: 70 PPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLE 104
VS ++TGS D T ++++ G L T +
Sbjct: 59 --DVSRDSSRLITGSADQTAKLWDVKSGKELFTFK 91
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 33.9 bits (74), Expect = 0.16
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 11 ILNGHSMDVRSVAATKEFCIL-SASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWV 69
++ GH + + +E +L S ++D T LW + + TY+GH V C C
Sbjct: 5 LMKGHERPLTFLRYNREGDLLFSCAKDHTPTLWFADNGERLG---TYRGHNGAVWC-C-- 58
Query: 70 PPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLE 104
VS ++TGS D T ++++ G L T +
Sbjct: 59 --DVSRDSSRLITGSADQTAKLWDVKSGKELFTFK 91
>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
family protein similar to Pop3 (GI:3434986)
[Schizosaccharomyces pombe]; contains Pfam PF00400: WD
domain, G-beta repeat (6 copies, 2 weak);
Length = 312
Score = 33.9 bits (74), Expect = 0.16
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 11/84 (13%)
Query: 30 ILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPPCVSFPEG-LVVTGSNDNT 88
+ +AS D+T K+W+ +G K V+T GH WV C +G +VT S+D T
Sbjct: 232 LATASSDKTVKIWNLDGFK-LEKVLT--GHER------WVWDCDFSMDGEYLVTASSDTT 282
Query: 89 ILGYNLQDGTVLLTLEGHENA-VC 111
++++ G + + H A VC
Sbjct: 283 ARLWSMRAGKEEMVYQAHRKATVC 306
>At5g58230.1 68418.m07290 WD-40 repeat protein (MSI1) contains 6
WD-40 repeats (PF0400); identical to WD-40 repeat
protein (SP:O22467) [Arabidopsis thaliana]
Length = 424
Score = 33.5 bits (73), Expect = 0.21
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 7/106 (6%)
Query: 11 ILNGHSMDVRSVA--ATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICW 68
I H V VA E+ S D+ +W V + H V+C+ +
Sbjct: 222 IFKAHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRSPSASKPVQSVVAHSMEVNCLAF 281
Query: 69 VPPCVSFPEGLVVTGSNDNTILGYNLQD-GTVLLTLEGHENAVCSV 113
P F E +V TGS D T+ ++L+ T L T + H+ V V
Sbjct: 282 NP----FNEWVVATGSTDKTVKLFDLRKLSTALHTFDSHKEEVFQV 323
>At5g23730.1 68418.m02782 transducin family protein / WD-40 repeat
family protein contains similarity to photomorphogenesis
repressor protein; contains Pfam PF00400: WD domain,
G-beta repeat (5 copies)
Length = 243
Score = 33.5 bits (73), Expect = 0.21
Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 18/141 (12%)
Query: 54 ITYKGHRNFVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHEN--AVC 111
+T +GH VS + ++ G VVT D + ++++DG V+ T EGH N
Sbjct: 107 LTLQGHTKTVSYVRFLDG------GTVVTAGTDGCLKLWSVEDGRVIRTYEGHVNNRNFV 160
Query: 112 SVSPGRDSGILLSISINPAVQNGFATSGEGGSVRLWTGG------DCIREIRLPVQSVWS 165
+S R+ + S N V F G +W G + + R W
Sbjct: 161 GLSVWRNGALFGCGSENNRV---FVYDRRWGK-PVWVDGFEPVGMNSGSDKRFVSSVCWR 216
Query: 166 VTCLENGDIVTGSSDGVIRVF 186
+ ++ +V G SDGV++V+
Sbjct: 217 QSGVDQCTLVAGGSDGVLQVY 237
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 12 LNGHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGH---RNFVSCICW 68
L GH+ V V +++A D KLW E + + TY+GH RNFV W
Sbjct: 109 LQGHTKTVSYVRFLDGGTVVTAGTDGCLKLWSVEDGRV---IRTYEGHVNNRNFVGLSVW 165
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 33.5 bits (73), Expect = 0.21
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 79 LVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISINPAVQNGFATS 138
++ TG D T + ++ G +L TL GH V S+ D+ ++L+ S + V+ + S
Sbjct: 236 VIATGGIDTTAVLFDRPSGQILSTLTGHSKKVTSIKFVGDTDLVLTASSDKTVRI-WGCS 294
Query: 139 GEGGSVRLWTGGDCIREIR 157
+G T D E+R
Sbjct: 295 EDGNYTSRHTLKDHSAEVR 313
Score = 33.1 bits (72), Expect = 0.27
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
Query: 4 PDYKLSAILNGHSMDVRSVAATKEF-CILSASRDRTAKLWHPEGVKEFVNVITYKGHRNF 62
P ++ + L GHS V S+ + +L+AS D+T ++W + + T K H
Sbjct: 252 PSGQILSTLTGHSKKVTSIKFVGDTDLVLTASSDKTVRIWGCSEDGNYTSRHTLKDHSAE 311
Query: 63 VSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTL-EGHENAV 110
V + V V+ S D+T Y+L G L + + EN V
Sbjct: 312 VRAV-----TVHATNKYFVSASLDSTWCFYDLSSGLCLAQVTDASENDV 355
>At3g45140.1 68416.m04872 lipoxygenase (LOX2) identical to SP|P38418
Length = 896
Score = 32.7 bits (71), Expect = 0.36
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 155 EIRLPVQSVWSVTCLENGDIVTGSSDGVIRVFTKDPARFADE--ETIKNF-EEEVEKIQA 211
E++LP S+ + TC + S D R+F D + + E +K + +EE+E +Q
Sbjct: 169 ELKLPGGSI-TFTC--ESWVAPKSVDPTKRIFFSDKSYLPSQTPEPLKKYRKEELETLQG 225
Query: 212 SSEQEIGGF-KVSELPGPEVLLEPGKSDGQTKLVR 245
+ +E+G F K + +V + G D +L R
Sbjct: 226 KNREEVGEFTKFERIYDYDVYNDVGDPDNDPELAR 260
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 32.7 bits (71), Expect = 0.36
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 72 CVSFPEG--LVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISINP 129
C+ F ++ +GS D I + ++ G + + H V S+S RD LLS S +
Sbjct: 268 CIDFSRDSEMLASGSQDGKIKIWRIRTGVCIRRFDAHSQGVTSLSFSRDGSQLLSTSFDQ 327
Query: 130 AVQNGFATSGE 140
+ SG+
Sbjct: 328 TARIHGLKSGK 338
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 32.7 bits (71), Expect = 0.36
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 52 NVITYKGHRNFVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVC 111
+V T+ GH+ + + P + LV TG D+ + + +G L GH+++V
Sbjct: 62 SVHTFTGHKGELYALACSPTDAT----LVATGGGDDKAFLWKIGNGDWAAELPGHKDSVS 117
Query: 112 SVSPGRDSGILLSISINPAVQNGFATSG 139
++ D +L S ++ VQ A+SG
Sbjct: 118 CLAFSYDGQLLASGGLDGVVQIFDASSG 145
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/49 (24%), Positives = 29/49 (59%)
Query: 80 VVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISIN 128
+ TG + T+ ++ G + T GH++AV ++S ++ ++S+S++
Sbjct: 343 LATGCANGTVSIWDSLLGNCVHTYHGHQDAVQAISVSTNTDFIVSVSVD 391
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 32.3 bits (70), Expect = 0.48
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 14 GHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVP 70
GHS D+ ++ +K +LSAS D + +LW G ++ + + + H N+V+ + + P
Sbjct: 354 GHSGDILDISWSKNNRLLSASVDNSVRLWQ-IGCEDCLGIFS---HNNYVTSVQFNP 406
Score = 29.1 bits (62), Expect = 4.4
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 79 LVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISINPAVQNGFATS 138
L ++ S +N +L ++ D +V L G E+ + S + + S+ NP + F +
Sbjct: 360 LDISWSKNNRLLSASV-DNSVRLWQIGCEDCLGIFS---HNNYVTSVQFNPVDDDHFISG 415
Query: 139 GEGGSVRLWTGGDC 152
G VR+W+ C
Sbjct: 416 SIDGKVRIWSASQC 429
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 32.3 bits (70), Expect = 0.48
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 14 GHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVP 70
GHS D+ ++ +K +LSAS D + +LW G ++ + + + H N+V+ + + P
Sbjct: 354 GHSGDILDISWSKNNRLLSASVDNSVRLWQ-IGCEDCLGIFS---HNNYVTSVQFNP 406
Score = 29.1 bits (62), Expect = 4.4
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 79 LVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISINPAVQNGFATS 138
L ++ S +N +L ++ D +V L G E+ + S + + S+ NP + F +
Sbjct: 360 LDISWSKNNRLLSASV-DNSVRLWQIGCEDCLGIFS---HNNYVTSVQFNPVDDDHFISG 415
Query: 139 GEGGSVRLWTGGDC 152
G VR+W+ C
Sbjct: 416 SIDGKVRIWSASQC 429
>At4g21130.1 68417.m03055 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); some
similarity to a group of proteins with homology to
mammalian apoptosis regulators identified in zebrafish
(PUBMED:10917738)Apaf-1(gi:7677507)
Length = 537
Score = 32.3 bits (70), Expect = 0.48
Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 10/138 (7%)
Query: 14 GHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPPCV 73
GH ++ S+ A +LS RDRT +L+ V + Y+ + C C+ V
Sbjct: 303 GHQSELLSIDALGRERVLSVGRDRTMQLYKVGIVVPESTRLIYRASESNFECCCF----V 358
Query: 74 SFPEGLVVTGSNDNTILGYN-LQDGTVLLTLEGHENAVCSVSPGRDSGILLSISINPAVQ 132
+ E L +GS++ +I ++ L+ V + H S + S + AV
Sbjct: 359 NSDEFL--SGSDNGSIALWSILKKKPVFIVNNAHHVIADHDSVNHNCTPACSWVSSVAVC 416
Query: 133 NG--FATSGEG-GSVRLW 147
G A SG G G VRLW
Sbjct: 417 RGSELAASGAGNGCVRLW 434
>At1g03110.1 68414.m00288 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat domain 4 protein (GI:9955698) [Mus
musculus]
Length = 427
Score = 32.3 bits (70), Expect = 0.48
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 58 GHRNFVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLE 104
GH F++C +V +G +++GS D+T+ +++ G++L T E
Sbjct: 201 GHSEFITCTAFVST-PELTQGYLMSGSGDSTVRLWDITSGSLLDTCE 246
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 31.9 bits (69), Expect = 0.63
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 47 VKEFVNVITYKGHRNFVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGH 106
V++ N+ +GHRN V C + V+TGS+D + +++ L + GH
Sbjct: 232 VQKMQNIKRLRGHRNAVYC-----AILDRSGRYVITGSDDRLVKVWSMDTAYCLASCRGH 286
Query: 107 ENAVCSVSPGRDSGILLSIS 126
E + ++ ++ + S S
Sbjct: 287 EGDITDLAVSSNNIFIASAS 306
Score = 31.5 bits (68), Expect = 0.83
Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 18/118 (15%)
Query: 30 ILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPPCVSFPEGLVVTGSNDNTI 89
+++ S DR K+W + + + +GH ++ + VS + + SND I
Sbjct: 260 VITGSDDRLVKVWSMDTA---YCLASCRGHEGDITDLA-----VSSNNIFIASASNDCVI 311
Query: 90 LGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISINPAVQNGFATSGEGGSVRLW 147
+ L DG + L GH AV ++ + S P +S + G+ R+W
Sbjct: 312 RVWRLPDGLPVSVLRGHTGAVTAI----------AFSPRPGSPYQLLSSSDDGTCRIW 359
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 31.9 bits (69), Expect = 0.63
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 11 ILNGHSMDVRSV--AATKEFCILSASRDRTAKLWHPEG 46
+L GH V V ++ + C+ +AS DRT K+W +G
Sbjct: 101 VLKGHKEHVTDVVFSSVDDECLATASTDRTEKIWKTDG 138
Score = 31.5 bits (68), Expect = 0.83
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 11 ILNGHSMDVRSVAATKE-FCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWV 69
I GH V SV + + + S D ++W +++ + +I H N VS + +
Sbjct: 167 IFQGHIKQVLSVDFSPNGYHLASGGEDNQCRIWDLR-MRKLLYIIP--AHVNLVSQVKYE 223
Query: 70 PPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDS 119
P F + T S+D + ++ +D +++ +L GHE+ V S+ DS
Sbjct: 224 PQERYF----LATASHDMNVNIWSGRDFSLVKSLVGHESKVASLDIAVDS 269
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 31.9 bits (69), Expect = 0.63
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 12/132 (9%)
Query: 5 DYKLSAILNG---HSMDVRSVAA-TKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHR 60
DY++ +++ H VR V + +S D K+W+ K + T GH
Sbjct: 37 DYRMGTLIDRFDEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWN---YKNHRCLFTLLGHL 93
Query: 61 NFVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSG 120
+++ + + +P +V+ S+D TI +N Q T + L GH + V S
Sbjct: 94 DYIRTVQFHH---EYP--WIVSASDDQTIRIWNWQSRTCVSVLTGHNHYVMCASFHPKED 148
Query: 121 ILLSISINPAVQ 132
+++S S++ V+
Sbjct: 149 LVVSASLDQTVR 160
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 31.5 bits (68), Expect = 0.83
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 12 LNGHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPP 71
L HS V S+ +F +LS S D T K+W T+K + V +C V
Sbjct: 310 LTDHSSVVMSLICWDQF-LLSCSLDNTVKIWAAIEGGNLEVTYTHK-EEHGVLALCGVHD 367
Query: 72 CVSFPEGLVVTGSNDNTILGYNLQDGT 98
+ P +++ NDNT+ Y+L T
Sbjct: 368 AEAKP--VLLCACNDNTLRLYDLPSFT 392
>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1135
Score = 31.5 bits (68), Expect = 0.83
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 80 VVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGI 121
VVT D TI ++ G L T EGHE V SV P + I
Sbjct: 481 VVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQKENI 522
>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1137
Score = 31.5 bits (68), Expect = 0.83
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 80 VVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGI 121
VVT D TI ++ G L T EGHE V SV P + I
Sbjct: 481 VVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQKENI 522
>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 31.5 bits (68), Expect = 0.83
Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 18/129 (13%)
Query: 19 VRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPPCVSFPEG 78
++S + + + + SRD T K W + F + T++ H + WV E
Sbjct: 44 LKSSVSNDQSYLFTGSRDGTLKRWAFDEDATFCSA-TFESH------VDWVNDAALAGES 96
Query: 79 LVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISINPAVQNGFATS 138
+V+ S+D T+ T +G + VC+ + + S + +++ N A+
Sbjct: 97 TLVSCSSDTTVK-----------TWDGLSDGVCTRTLRQHSDYVTCLAVAAKNNNVVASG 145
Query: 139 GEGGSVRLW 147
G GG V +W
Sbjct: 146 GLGGEVFIW 154
>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 31.5 bits (68), Expect = 0.83
Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 18/129 (13%)
Query: 19 VRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPPCVSFPEG 78
++S + + + + SRD T K W + F + T++ H + WV E
Sbjct: 44 LKSSVSNDQSYLFTGSRDGTLKRWAFDEDATFCSA-TFESH------VDWVNDAALAGES 96
Query: 79 LVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISINPAVQNGFATS 138
+V+ S+D T+ T +G + VC+ + + S + +++ N A+
Sbjct: 97 TLVSCSSDTTVK-----------TWDGLSDGVCTRTLRQHSDYVTCLAVAAKNNNVVASG 145
Query: 139 GEGGSVRLW 147
G GG V +W
Sbjct: 146 GLGGEVFIW 154
>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
contains Pfam PF02138: Beige/BEACH domain; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies)
Length = 2946
Score = 31.5 bits (68), Expect = 0.83
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 57 KGHRNFVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEG-HENAVCSVSP 115
+GHR + C C CVS +G+VV+ S + +L ++++ G ++ L G +++C S
Sbjct: 2746 RGHRRELVC-C----CVSSDQGVVVSSSESSDVLLHSIRKGRLIRRLVGVKADSLCISSD 2800
Query: 116 G 116
G
Sbjct: 2801 G 2801
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 31.5 bits (68), Expect = 0.83
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 11 ILNGHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRN 61
+ +GH V V + SAS D T +LW VK+ + V T++GH N
Sbjct: 544 VFSGHKKAVSYVKFLSNNELASASTDSTLRLW---DVKDNLPVRTFRGHTN 591
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 31.5 bits (68), Expect = 0.83
Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 12/132 (9%)
Query: 5 DYKLSAILNG---HSMDVRSVAA-TKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHR 60
DY++ +++ H VR V + +S D K+W+ K + T GH
Sbjct: 37 DYRMGTLIDRFDEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWN---YKTHRCLFTLLGHL 93
Query: 61 NFVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSG 120
+++ + + +V+ S+D TI +N Q T + L GH + V S
Sbjct: 94 DYIRTVQF-----HHENPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKED 148
Query: 121 ILLSISINPAVQ 132
+++S S++ V+
Sbjct: 149 LVVSASLDQTVR 160
>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400); similar to
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]; contains non-consensus (GC) donor splice
sites at introns 4 and 6
Length = 1017
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 11 ILNGHSMDVRSVAATKEFCILSASRDRTAKLWHPE-----GVKEFVNVITYKGHRNFVSC 65
IL+GH+ V +++AS D T KLW + G+ +T+ GH N +
Sbjct: 877 ILSGHNKAVSYAKFLDNETLVTASTDNTLKLWDLKKTTHGGLSTNACSLTFGGHTNEKNF 936
Query: 66 ICWVPPCVSFPEGLVVTGSNDNTILGYN 93
+ +S +G + GS N + Y+
Sbjct: 937 V-----GLSTSDGYIACGSETNEVYAYH 959
>At2g26490.1 68415.m03178 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
related to En/Spm transposon family of maize
Length = 465
Score = 31.1 bits (67), Expect = 1.1
Identities = 32/132 (24%), Positives = 65/132 (49%), Gaps = 12/132 (9%)
Query: 59 HRNFVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRD 118
H + VSC+ ++ +GL+ + S D TI + + D L ++ H++AV SV +
Sbjct: 205 HADAVSCLS-----LNDEQGLLYSASWDRTIKVWRIADSKCLESIPAHDDAVNSVVSTTE 259
Query: 119 SGILLSISINPAVQNGFATSGEGGSVRLWTGGDCIREIRLPVQSVWSVTCLENGDIV-TG 177
+ I+ S S + V+ + +G +T ++ + +V ++ +NG V G
Sbjct: 260 A-IVFSGSADGTVK-AWKRDQQG----KYTKHTLMQTLTKQESAVTALAVSKNGAAVYFG 313
Query: 178 SSDGVIRVFTKD 189
SSDG++ + ++
Sbjct: 314 SSDGLVNFWERE 325
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 18 DVRSVAATKEFCILSASRDRTAKLWH-PEGVKEFVNVITYKGHRNFVSCIC 67
D+ K+ C+ + D+T K+W GVK + T++GH V IC
Sbjct: 467 DIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRY----TFEGHEAPVYSIC 513
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 18 DVRSVAATKEFCILSASRDRTAKLWH-PEGVKEFVNVITYKGHRNFVSCIC 67
D+ K+ C+ + D+T K+W GVK + T++GH V IC
Sbjct: 467 DIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRY----TFEGHEAPVYSIC 513
>At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 14 GHSMDVRSVAATKEFCILSASRDRTAKLW----HPEGVKEFVNVITYKGHRNFVSCICWV 69
GH V V ++S+S D T KLW G+ E + ++ GH N + +
Sbjct: 660 GHHKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINE-TPLHSFMGHTNVKNFV--- 715
Query: 70 PPCVSFPEGLVVTGSNDNTILGYN 93
+S +G + TGS N + Y+
Sbjct: 716 --GLSVSDGYIATGSETNEVFVYH 737
>At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 14 GHSMDVRSVAATKEFCILSASRDRTAKLW----HPEGVKEFVNVITYKGHRNFVSCICWV 69
GH V V ++S+S D T KLW G+ E + ++ GH N + +
Sbjct: 660 GHHKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINE-TPLHSFMGHTNVKNFV--- 715
Query: 70 PPCVSFPEGLVVTGSNDNTILGYN 93
+S +G + TGS N + Y+
Sbjct: 716 --GLSVSDGYIATGSETNEVFVYH 737
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 30.7 bits (66), Expect = 1.5
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
Query: 12 LNGHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVK-EFVNVITYKGHRNFVSCICWVP 70
+ GH V A + S SRDR L H V+ +FV+ + GH++ V + W
Sbjct: 253 MGGHQTRT-GVLAWNSRILSSGSRDRNI-LQHDIRVQSDFVSKLV--GHKSEVCGLKW-- 306
Query: 71 PCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVS 114
S + + +G NDN +L +N +L L H AV +++
Sbjct: 307 ---SHDDRELASGGNDNQLLVWNNHSQQPILKLTEHTAAVKAIT 347
>At4g33500.1 68417.m04758 protein phosphatase 2C-related /
PP2C-related YHR077c (NMD2,IFS1) protein -Saccharomyces
cerevisiae,PID:g555939
Length = 724
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 158 LPVQSVWSVTCLENGDIVTGSSDGVI-RVFTKDPARFADEETIKNFE-EEVEKIQASSEQ 215
L + V+ V LE GD+V ++DG+ ++ K+ ++ E +++ ++ A+ Q
Sbjct: 622 LKLAEVYHVN-LEEGDVVIAATDGLFDNLYEKEIVSIVCGSLKQSLEPQKIAELVAAKAQ 680
Query: 216 EIGGFKVSELPGPEVLLEPG 235
E+G K P + E G
Sbjct: 681 EVGRSKTERTPFADAAKEEG 700
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 30.7 bits (66), Expect = 1.5
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 12/96 (12%)
Query: 29 CILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPPCVSFPEGLVVTGSNDNT 88
C+L+AS D+T K+W E K V+ GH V +C P L+V+GS D
Sbjct: 142 CLLTASGDQTIKVWDVEENK-CTGVLI--GHTGTVKSMCSHPT----NSDLLVSGSRDGC 194
Query: 89 ILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLS 124
++L+ H+ C S G G LS
Sbjct: 195 FALWDLR-----CKSSSHKEEFCINSTGMVKGAHLS 225
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 32 SASRDRTAKLW-HPEGVKEFVNVITYKGHRNFVSCICWVPPCVSFPEGLVVTGSNDNTIL 90
+A +R W PE + N +GH +V + + P F TGS D TI
Sbjct: 141 AALMERMPSRWPRPEWHAPWKNYRVLQGHLGWVRSVAFDPSNEWF-----CTGSADRTIK 195
Query: 91 GYNLQDGTVLLTLEGH 106
+++ G + LTL GH
Sbjct: 196 IWDVATGVLKLTLTGH 211
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 80 VVTGSNDNTILGYNLQDGTVLLTLEGHENAV 110
V+TGS+D+TI ++L+ G + T+ H+ V
Sbjct: 310 VITGSHDSTIKFWDLRYGKSMATITNHKKTV 340
>At1g47610.1 68414.m05288 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein (GI:2739374)
[Arabidopsis thaliana]
Length = 351
Score = 30.7 bits (66), Expect = 1.5
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 16/86 (18%)
Query: 106 HENAVCSVSPGRDSGILLSISINPAVQNGFATSGEGGSVRLWTGGD--CIREIRLPVQSV 163
H +AV +S D G+L S S + +V++W D CI I+ +V
Sbjct: 134 HSDAVSCLSLAEDQGLLYSASWDR-------------TVKVWRIHDLKCIESIKAHDDAV 180
Query: 164 WSVTCLENGDIVTGSSDGVIRVFTKD 189
SVT E+ + TGS+DG ++V+ ++
Sbjct: 181 NSVTTAESL-VFTGSADGTVKVWKRE 205
Score = 28.7 bits (61), Expect = 5.9
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 15 HSMDVRSVAATKEFCIL-SASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPPCV 73
HS V ++ ++ +L SAS DRT K+W +K ++ K H + V+ V
Sbjct: 134 HSDAVSCLSLAEDQGLLYSASWDRTVKVWRIHDLKCIESI---KAHDDAVN-------SV 183
Query: 74 SFPEGLVVTGSNDNTI 89
+ E LV TGS D T+
Sbjct: 184 TTAESLVFTGSADGTV 199
>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 363
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 86 DNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISINPAVQNGFATSGEGGS 143
D+T++G GT L+ + H++ V V + G+L S + + F S G S
Sbjct: 291 DSTVVGDYCFAGTSLIGYDDHQSVVAKVKYAKQKGLLGYFSWHVGADDNFGLSRAGSS 348
>At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 18 DVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCIC 67
D+ K+ C+++ D+ K+W G K F T++GH V IC
Sbjct: 458 DLAFAHPNKQMCVVTCGDDKLIKVWDLSGKKLF----TFEGHEAPVYSIC 503
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 80 VVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGI 121
VVT +D I ++L G L T EGHE V S+ P + I
Sbjct: 470 VVTCGDDKLIKVWDLS-GKKLFTFEGHEAPVYSICPHQKENI 510
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 18 DVRSVAATKEFCILSASRDRTAKLWH-PEGVKEFVNVITYKGHRNFVSCIC 67
D+ K+ C+++ D+T K+W GVK T++GH V +C
Sbjct: 467 DISFSTPNKQLCVITCGDDKTIKVWDAATGVKRH----TFEGHEAPVYSVC 513
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 80 VVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSP 115
V+T +D TI ++ G T EGHE V SV P
Sbjct: 479 VITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCP 514
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 18 DVRSVAATKEFCILSASRDRTAKLWH-PEGVKEFVNVITYKGHRNFVSCIC 67
D+ K+ C+++ D+T K+W GVK T++GH V +C
Sbjct: 467 DISFSTPNKQLCVITCGDDKTIKVWDAATGVKRH----TFEGHEAPVYSVC 513
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 80 VVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSP 115
V+T +D TI ++ G T EGHE V SV P
Sbjct: 479 VITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCP 514
>At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8
WD-40 repeats (PF00400) (2 weak)
Length = 1108
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 18 DVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCIC 67
D+ ++ C+++ D+ K+W G K F T++GH V IC
Sbjct: 457 DLAFANPNRQLCVITCGDDKLIKVWDVSGRKHF----TFEGHDAPVYSIC 502
>At4g31160.1 68417.m04423 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
KIAA0800 protein, Homo sapiens GI:3882321 EMBL:AB018343
Length = 1846
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 80 VVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSP--GRDSGILLSISINPAVQNGFAT 137
+ GS+ I + G++L ++ GH+ V V P RD+ +LLS S + VQ A+
Sbjct: 1444 IAVGSHAGEIKIFEASSGSMLESVSGHQAPVTLVQPYVSRDTQLLLS-SSSSDVQLWDAS 1502
Query: 138 SGEGG 142
S GG
Sbjct: 1503 SITGG 1507
>At3g12650.1 68416.m01575 expressed protein
Length = 238
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/69 (28%), Positives = 30/69 (43%)
Query: 203 EEEVEKIQASSEQEIGGFKVSELPGPEVLLEPGKSDGQTKLVRRGAAVKCYSWSVAENTW 262
E E +K + S E+E+ K E+ GP V + +T+ V G YS S A
Sbjct: 77 ETEPKKPEESKEEELQKMKHQEIEGPTVERDLSALGNETRQVLEGMMKNMYSLSGAMGAL 136
Query: 263 NEIGDVMGA 271
++GA
Sbjct: 137 GLTQLILGA 145
>At4g16050.1 68417.m02435 expressed protein
Length = 666
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 42 WHPEGVKEFVNVITYKGHRN--FVSCIC--WVPPCVS--FPEG-LVVTGSNDNTILGYNL 94
W G+ E + TY+ H+N + + W P + FP G +T + N +LG+++
Sbjct: 93 WLKSGIFEAIKASTYRIHKNPSLILSLAQNWCPETNTFVFPWGEATITLEDVNVLLGFSI 152
Query: 95 QDGTVLLTLEGHE 107
+V +L+ E
Sbjct: 153 SGSSVFASLQSSE 165
>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
sapiens}; similar to WD repeat protein Srw1
-Schizosaccharomyces pombe,PID:d1023012
Length = 475
Score = 29.5 bits (63), Expect = 3.4
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 38 TAKLWHPEGVKEFVNVITYKGHRNFVSCICWVPPCVSFPEGLVVTGSNDNTILGYNLQ-D 96
T ++W V N+ T +GHR V + W +S +GS D +IL +++
Sbjct: 232 TVQIWD---VLRCKNIRTMEGHRLRVGALAWSSSVLS-------SGSRDKSILQRDIRTQ 281
Query: 97 GTVLLTLEGHENAVCSVSPGRDSGILLS 124
+ L+GH++ +C + D+ L S
Sbjct: 282 EDHVSKLKGHKSEICGLKWSSDNRELAS 309
>At4g07410.1 68417.m01136 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400) (2
weak); similar to Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) {Podospora anserina}
Length = 815
Score = 29.5 bits (63), Expect = 3.4
Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 12/112 (10%)
Query: 89 ILGYNLQDGTV-LLTLEGHENAVCSVSPGRDSGILLSISINPAVQNGFATSGEGGSVRLW 147
IL DG V L + E S R SG LS++ +P + F+ S +G +R W
Sbjct: 167 ILAAACDDGCVRLYRISNLEKLTYYRSLPRVSGRALSVTWSPDAKRIFSGSSDG-LIRCW 225
Query: 148 TGGDCIREIRLPVQ----------SVWSVTCLENGDIVTGSSDGVIRVFTKD 189
C R+ VWS+ L +V+G S G ++ + +
Sbjct: 226 DATSCHEVYRITAGLGGLGSSSEICVWSLLSLRCSVLVSGDSTGTVQFWDSE 277
>At2g31300.1 68415.m03821 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
identical to putative ARP2/3 protein complex subunit p41
(GI:4432825)[Arabidopsis thaliana]; similar to ARP2/3
complex 41 kDa subunit (P41-ARC) (Actin-related protein
2/3 complex subunit 1B) (SP:Q9WV32) [Mus musculus]
Length = 378
Score = 29.5 bits (63), Expect = 3.4
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 11 ILNGHSMDVRSVA-ATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWV 69
+L H V + ++K I++ S DR + +W EG E+V + C+ W
Sbjct: 50 VLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWSLEGA-EWVPTLVILRLNRAALCVQWS 108
Query: 70 PPCVSFPEGLVVTGSNDNTILGYNLQDG--TVLLTLEGHENAVCSVSPGRDSGILLSISI 127
P F G +G+ I Y ++ L + HE++V SV+ + +LL+ +
Sbjct: 109 PKENKFAVG---SGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVA-WHPNNVLLATTS 164
Query: 128 NPAVQNGFATSGEG 141
F+T +G
Sbjct: 165 TDGKCRVFSTFIKG 178
>At2g30910.2 68415.m03768 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 29.5 bits (63), Expect = 3.4
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 11 ILNGHSMDVRSVA-ATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWV 69
+L H V + ++K I++ S DR + +W EG E+V + C+ W
Sbjct: 50 VLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWSLEGA-EWVPTLVILRLNRAALCVQWS 108
Query: 70 PPCVSFPEGLVVTGSNDNTILGYNLQDG--TVLLTLEGHENAVCSVSPGRDSGILLSISI 127
P F G +G+ I Y ++ L + HE++V SV+ + +LL+ +
Sbjct: 109 PKENKFAVG---SGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVA-WHPNNVLLATTS 164
Query: 128 NPAVQNGFATSGEG 141
F+T +G
Sbjct: 165 TDGKCRVFSTFIKG 178
>At2g30910.1 68415.m03767 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 29.5 bits (63), Expect = 3.4
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 11 ILNGHSMDVRSVA-ATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRNFVSCICWV 69
+L H V + ++K I++ S DR + +W EG E+V + C+ W
Sbjct: 50 VLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWSLEGA-EWVPTLVILRLNRAALCVQWS 108
Query: 70 PPCVSFPEGLVVTGSNDNTILGYNLQDG--TVLLTLEGHENAVCSVSPGRDSGILLSISI 127
P F G +G+ I Y ++ L + HE++V SV+ + +LL+ +
Sbjct: 109 PKENKFAVG---SGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVA-WHPNNVLLATTS 164
Query: 128 NPAVQNGFATSGEG 141
F+T +G
Sbjct: 165 TDGKCRVFSTFIKG 178
>At4g34380.1 68417.m04884 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Myosin heavy chain kinase B (MHCK
B).(SP:P90648) [Dictyostelium discoideum]
Length = 495
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 78 GLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRD 118
GL+ + S D TI + + D L ++ H++A+ SV G D
Sbjct: 248 GLLYSSSWDTTIKVWRIADSKCLESIHAHDDAINSVMSGFD 288
>At4g32190.1 68417.m04581 centromeric protein-related low similarity
to SP|Q02224 Centromeric protein E (CENP-E protein)
{Homo sapiens}
Length = 783
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Query: 151 DCIREIRLPVQSVWSVT--CLENGDIVTGSS---DGVI 183
+C+ E++ V +WS+T LEN IV G+S +GVI
Sbjct: 745 ECLGEVKTEVVRLWSLTEKLLENAGIVAGTSTCMEGVI 782
>At3g51930.1 68416.m05696 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
myosin heavy chain kinase B (SP:P90648)(GI:1903458)
[Dictyostelium discoideum]
Length = 415
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 72 CVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPG 116
C++ G++ +GS D T+ + L D L +++ H++A+ + G
Sbjct: 179 CLAVHAGIIYSGSWDKTLKVWRLSDLKCLESIKAHDDAINGLVAG 223
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 4 PDYKLSAILNGHSMDVRSVAATKEFC-ILSASRDRTAKLWHPEGVKE 49
P A L GH+ V +A + + C + SA+ D T + W+ GV E
Sbjct: 390 PSMVKMAELTGHTSRVLYMAQSPDGCTVASAAGDETLRFWNVFGVPE 436
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 4 PDYKLSAILNGHSMDVRSVAATKEFC-ILSASRDRTAKLWHPEGVKE 49
P A L GH+ V +A + + C + SA+ D T + W+ GV E
Sbjct: 380 PSMVKMAELTGHTSRVLYMAQSPDGCTVASAAGDETLRFWNVFGVPE 426
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 28.7 bits (61), Expect = 5.9
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 12 LNGHSMDVRSVAATKEFCILSASRDRTAKLWHPEGVKEFVNV-ITYKGHRNF-VSCICWV 69
L H+ V S+ +F +LS S D T K+W E N+ +TY + V +C V
Sbjct: 303 LTEHTSVVMSLICWDQF-LLSCSLDNTVKIW---AATEGGNLEVTYTHKEEYGVLALCGV 358
Query: 70 PPCVSFPEGLVVTGSNDNTILGYNLQDGT 98
+ P +++ NDN++ Y+L T
Sbjct: 359 HDAEAKP--VLLCSCNDNSLHLYDLPSFT 385
>At4g00090.1 68417.m00009 transducin family protein / WD-40 repeat
family protein similar to Transducin beta-like 2 protein
(WS beta-transducin repeats protein) (WS-betaTRP)
(Williams-Beuren syndrome chromosome region 13 protein)
(SP:Q9Y4P3) {Homo sapiens}
Length = 430
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 47 VKEFVNVITYKGHRNFVSCICWVPPCVSFPEGLVVTGSNDNTILGYNL 94
VKE V+ KGH++ V+ +C+ P ++T S D +I +N+
Sbjct: 276 VKEVSRVMQLKGHKSAVTWLCFSPNSEQ-----IITASKDGSIRVWNI 318
>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
GTP-binding protein beta chain homolog, Nicotiana
tabacum, PIR:T16970
Length = 438
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 13 NGHSMDVRSVAATKEFC---ILSASRDRTAKLWHPEGVKEFVNVI 54
N H+M V + C I+S+S DRT K+W K N+I
Sbjct: 170 NEHTMSVTDIVIDYGGCNAVIISSSEDRTCKVWSLSRGKLLKNII 214
>At2g43700.1 68415.m05432 lectin protein kinase family protein
contains pfam domains PF00139: Legume lectins beta
domain and PF00069: Protein kinase domain
Length = 658
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 160 VQSVWSVTCLENGDIVTGSSDGV 182
V + W++ C ENGDI+ +DG+
Sbjct: 546 VLAEWTLKCWENGDILEAVNDGI 568
>At1g52730.2 68414.m05959 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 28.7 bits (61), Expect = 5.9
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Query: 124 SISINPAVQNGFATSGEGGSVRL---WTGGD--CIREIRLPVQSV-WSVTCLENGDIVTG 177
S S+ P F GE VR+ +TG + C + PV V ++ T L +G
Sbjct: 232 SASLEPKSGEKFVAGGEDMWVRVFDFYTGEEIGCNKGHHGPVHCVRFTPTGLS---YASG 288
Query: 178 SSDGVIRVFTKDPARFADEET----IKNFEEEVEK 208
S DG IR++ PA + ET +K+ +EV K
Sbjct: 289 SEDGTIRIWQTTPANPEENETSSRRVKHSVDEVSK 323
>At1g52730.1 68414.m05958 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 28.7 bits (61), Expect = 5.9
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Query: 124 SISINPAVQNGFATSGEGGSVRL---WTGGD--CIREIRLPVQSV-WSVTCLENGDIVTG 177
S S+ P F GE VR+ +TG + C + PV V ++ T L +G
Sbjct: 232 SASLEPKSGEKFVAGGEDMWVRVFDFYTGEEIGCNKGHHGPVHCVRFTPTGLS---YASG 288
Query: 178 SSDGVIRVFTKDPARFADEET----IKNFEEEVEK 208
S DG IR++ PA + ET +K+ +EV K
Sbjct: 289 SEDGTIRIWQTTPANPEENETSSRRVKHSVDEVSK 323
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 28.3 bits (60), Expect = 7.8
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 21 SVAATKEFCILSASRDRTAKLWHPEGVKEFVNVITYKGHRN--FVSCICWVPPCVSFPEG 78
S++ +F I++ S LW G E+ + + GHR +V C+ SF
Sbjct: 404 SISGDGKFFIVNLSCQEI-HLWDLAG--EWKQPLKFSGHRQSKYVIRSCFGGLDSSF--- 457
Query: 79 LVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVS 114
+ +GS D+ + +NL++ L L GH V VS
Sbjct: 458 -IASGSEDSQVYIWNLKNTKPLEVLSGHSMTVNCVS 492
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 11 ILNGHSMDVRSVAATKEF--CILSASRDRTAKLWHP 44
+L+GHSM V V+ + + SAS D+T ++W P
Sbjct: 480 VLSGHSMTVNCVSWNPKNPRMLASASDDQTIRIWGP 515
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 28.3 bits (60), Expect = 7.8
Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 14/125 (11%)
Query: 12 LNGHSMDVRSVAATKEFCILSASRDRTAKLWH----PEGVKEFVNVITYKGHRNFVSCIC 67
L GH+ + SV L++ + K+W EG E V+ ++ G++ F SC+
Sbjct: 814 LQGHANPINSVCWDPSGDFLASVSEDMVKVWTLGTGSEG--ECVHELSCNGNK-FQSCV- 869
Query: 68 WVPPCVSFPEGLVVTGSNDNTILGYNLQDGTVLLTLEGHENAVCSVSPGRDSGILLSISI 127
+ P ++P L+V G + L +N+ + + TL HE + S++ +G++ S S
Sbjct: 870 FHP---AYPS-LLVIGCYQSLEL-WNMSENKTM-TLPAHEGLITSLAVSTATGLVASASH 923
Query: 128 NPAVQ 132
+ V+
Sbjct: 924 DKLVK 928
>At3g55060.1 68416.m06115 expressed protein contains weak similarity
to intracellular protein transport protein USO1
(Swiss-Prot:P25386) [Saccharomyces cerevisiae];
expression supported by MPSS
Length = 896
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 167 TCLENGDIVTGSSDGVIRVFTKDPARFADEETIKNFEEEVE--KIQASSEQEIGGFKV 222
TC E G + G DGV K P+ D+ K E+V I+ S +E+ K+
Sbjct: 530 TCKEQGKTIEGLRDGVSEEVKKQPSEKLDQLVKKLQVEQVRLTGIELSLRREVESMKL 587
>At3g50390.1 68416.m05512 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to myosin heavy chain kinase B (gb:U90946)
[Dictyostelium discoideum]
Length = 469
Score = 28.3 bits (60), Expect = 7.8
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 14/121 (11%)
Query: 3 IPDYKLSAILNGHSMDVRSVAATKEFCILSASRDRTAKLWHPEG-VKEFVNVITYKGHRN 61
+ D + +N H V +V + + + + S D T K+W E K+ + +
Sbjct: 240 VSDLRCVESVNAHEDAVNAVVSGFDGLVFTGSADGTVKVWRREDQAKDTKHFFS----ET 295
Query: 62 FVSCICWVPP-CVSFPEGLVVTGSNDNTILGY----NLQDGTVLLTLEGHENAV-CSVSP 115
+ C V V LV GS+D T+ + N+++G V L+GH+ AV C V+
Sbjct: 296 LLKQDCAVTAIAVDQSATLVYCGSSDGTVNFWERENNMKNGGV---LKGHKLAVLCLVAA 352
Query: 116 G 116
G
Sbjct: 353 G 353
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.134 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,658,699
Number of Sequences: 28952
Number of extensions: 387418
Number of successful extensions: 1449
Number of sequences better than 10.0: 141
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 1153
Number of HSP's gapped (non-prelim): 343
length of query: 337
length of database: 12,070,560
effective HSP length: 81
effective length of query: 256
effective length of database: 9,725,448
effective search space: 2489714688
effective search space used: 2489714688
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)
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