Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000228-TA|BGIBMGA000228-PA|undefined
         (1493 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    29   0.24 
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    27   0.73 
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    27   0.96 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    27   0.96 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    27   0.96 
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    26   1.7  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       25   2.9  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         25   5.1  
AJ850291-1|CAH64511.1|  533|Tribolium castaneum putative esteras...    24   6.8  
AJ850290-1|CAH64510.1|  533|Tribolium castaneum putative esteras...    24   6.8  
AJ850289-1|CAH64509.1|  533|Tribolium castaneum putative esteras...    24   6.8  
AJ850288-1|CAH64508.1|  510|Tribolium castaneum putative esteras...    24   6.8  
AJ850287-1|CAH64507.1|  509|Tribolium castaneum putative esteras...    24   6.8  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 29.1 bits (62), Expect = 0.24
 Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 794 KSLSNDNINVSSQGKKKKANIKKHYSLRQRDPSPEEAIRIPSPLTVEKSLNKQFTTELIK 853
           + L+N+N+ VSS  ++ +   +K + + +  PSP  ++   SP   + S ++ FT E+  
Sbjct: 86  RKLNNNNV-VSSTNQEIRGPKRKTWKVEEDSPSPTSSV---SPEVKDSSRDRPFTCEVCN 141

Query: 854 PS 855
            S
Sbjct: 142 RS 143


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 27.5 bits (58), Expect = 0.73
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 368 HYNFEAHRQNYKDSSPETERSLVSPNPSKELYVTTDEHCSDNEDKNRSEINTPKSYTNDS 427
           HYN        +  + +  +   SP PS +L  +T    + N D+N     T  ++T + 
Sbjct: 26  HYNIHHGATPPQSPNQQYTKDCSSPTPSDKLNTSTTSSVNVN-DQNIRRYRT--AFTREQ 82

Query: 428 LTRSEKD 434
           L R EK+
Sbjct: 83  LARLEKE 89


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
            transcription factor Maxillopediaprotein.
          Length = 523

 Score = 27.1 bits (57), Expect = 0.96
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 1377 EELPNPDTVKKKQEFKPYDATNTKKNENNSSQDAPVIVNFSKKEESSERDTESVGSCKTS 1436
            +E+P+  + +      P  ATN   N NN+S  A  + + S  ++  E D+        S
Sbjct: 116  DEIPDISSTRGNNNNTP-SATNNNTNFNNNSNGASSVGSSSPFDKLIEEDSR-------S 167

Query: 1437 TSDTSLDP 1444
              DTSL P
Sbjct: 168  NEDTSLHP 175


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
            ortholog protein.
          Length = 471

 Score = 27.1 bits (57), Expect = 0.96
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 1377 EELPNPDTVKKKQEFKPYDATNTKKNENNSSQDAPVIVNFSKKEESSERDTESVGSCKTS 1436
            +E+P+  + +      P  ATN   N NN+S  A  + + S  ++  E D+        S
Sbjct: 64   DEIPDISSTRGNNNNTP-SATNNNTNFNNNSNGASSVGSSSPFDKLIEEDSR-------S 115

Query: 1437 TSDTSLDP 1444
              DTSL P
Sbjct: 116  NEDTSLHP 123


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
            ortholog protein.
          Length = 477

 Score = 27.1 bits (57), Expect = 0.96
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 1377 EELPNPDTVKKKQEFKPYDATNTKKNENNSSQDAPVIVNFSKKEESSERDTESVGSCKTS 1436
            +E+P+  + +      P  ATN   N NN+S  A  + + S  ++  E D+        S
Sbjct: 247  DEIPDISSTRGNNNNTP-SATNNNTNFNNNSNGASSVGSSSPFDKLIEEDSR-------S 298

Query: 1437 TSDTSLDP 1444
              DTSL P
Sbjct: 299  NEDTSLHP 306


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 15/58 (25%), Positives = 27/58 (46%)

Query: 379 KDSSPETERSLVSPNPSKELYVTTDEHCSDNEDKNRSEINTPKSYTNDSLTRSEKDKN 436
           K S   +  S+ +  P K    TT ++ S       S  +T K+ TN++ ++S +  N
Sbjct: 139 KSSGLTSPLSVSTSPPGKPATSTTSQNLSSPASSTSSTSSTEKAGTNNNNSKSSQSSN 196


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 7/82 (8%)

Query: 918 SLETLSHSIKELQTNNEKHSENFDEIQHTGDDKFIDTSSLRTSK---DPFVTI-KLNK-- 971
           S +T  HS+ EL   ++  +E +DE Q     K      ++T K     FV I KL +  
Sbjct: 161 SSKTSEHSVDELSGKSDNDAEEYDE-QSLRVPKVNSHGKIKTFKCKQCDFVAITKLEQWN 219

Query: 972 VVKTTIPTFKKETCEKLAFVQQ 993
             K  I   K+ TC K  F+ +
Sbjct: 220 HSKVHIREDKRLTCPKCPFITE 241


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 1194 SEIEETPVEKIVKEFDANIYEKPKTTSNISETDSNRDTPEIEIVELSSDDNQNQKT 1249
            S +  TPV+  +  F  N+ E+ KTT  + +T      P+ +I    +  N N K+
Sbjct: 145  STLTGTPVDGWL--FGDNLSERMKTTRALEKTSEELKIPKAKINTGKTQYNLNSKS 198


>AJ850291-1|CAH64511.1|  533|Tribolium castaneum putative esterase
            protein.
          Length = 533

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 10/17 (58%), Positives = 14/17 (82%), Gaps = 1/17 (5%)

Query: 1449 KKYYYVNEN-SDKNKEK 1464
            K++YY NE  +DKNK+K
Sbjct: 363  KEFYYGNEEPTDKNKDK 379


>AJ850290-1|CAH64510.1|  533|Tribolium castaneum putative esterase
            protein.
          Length = 533

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 10/17 (58%), Positives = 14/17 (82%), Gaps = 1/17 (5%)

Query: 1449 KKYYYVNEN-SDKNKEK 1464
            K++YY NE  +DKNK+K
Sbjct: 363  KEFYYGNEEPTDKNKDK 379


>AJ850289-1|CAH64509.1|  533|Tribolium castaneum putative esterase
            protein.
          Length = 533

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 10/17 (58%), Positives = 14/17 (82%), Gaps = 1/17 (5%)

Query: 1449 KKYYYVNEN-SDKNKEK 1464
            K++YY NE  +DKNK+K
Sbjct: 363  KEFYYGNEEPTDKNKDK 379


>AJ850288-1|CAH64508.1|  510|Tribolium castaneum putative esterase
            protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 10/17 (58%), Positives = 14/17 (82%), Gaps = 1/17 (5%)

Query: 1449 KKYYYVNEN-SDKNKEK 1464
            K++YY NE  +DKNK+K
Sbjct: 363  KEFYYGNEEPTDKNKDK 379


>AJ850287-1|CAH64507.1|  509|Tribolium castaneum putative esterase
            protein.
          Length = 509

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 10/17 (58%), Positives = 14/17 (82%), Gaps = 1/17 (5%)

Query: 1449 KKYYYVNEN-SDKNKEK 1464
            K++YY NE  +DKNK+K
Sbjct: 362  KEFYYGNEEPTDKNKDK 378


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.307    0.125    0.339 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 338,230
Number of Sequences: 317
Number of extensions: 15523
Number of successful extensions: 53
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 14
length of query: 1493
length of database: 114,650
effective HSP length: 66
effective length of query: 1427
effective length of database: 93,728
effective search space: 133749856
effective search space used: 133749856
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 49 (23.8 bits)