Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000227-TA|BGIBMGA000227-PA|undefined
         (68 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    23   0.28 
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        19   6.1  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    18   8.0  

>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 23.0 bits (47), Expect = 0.28
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)

Query: 32  TTSMMNPYQDQETIRPIKLKASVR----IHKTGSQVDLRV 67
           TT +MN  ++Q   RPI  K   R    IHK  S + +++
Sbjct: 173 TTHVMNLLREQSRTRPITPKEIERMVQIIHKKFSSIQMQL 212


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 18.6 bits (36), Expect = 6.1
 Identities = 6/15 (40%), Positives = 11/15 (73%)

Query: 33  TSMMNPYQDQETIRP 47
           + ++N YQ+  +IRP
Sbjct: 88  SKILNRYQETGSIRP 102


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory
          receptor candidate 60 protein.
          Length = 364

 Score = 18.2 bits (35), Expect = 8.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 35 MMNPYQDQETIRPIKLKASVRIHKT 59
          ++N    QE     K+K  V +HKT
Sbjct: 63 LINLIIKQEEFFSPKIKRMVLLHKT 87


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.129    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,620
Number of Sequences: 317
Number of extensions: 254
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 68
length of database: 114,650
effective HSP length: 44
effective length of query: 24
effective length of database: 100,702
effective search space:  2416848
effective search space used:  2416848
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
S2: 35 (18.2 bits)