GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000227-TA|BGIBMGA000227-PA|undefined
         (68 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    25   0.93 
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    24   2.2  

>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 25.4 bits (53), Expect = 0.93
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 32  TTSMMNPYQDQETIRPIKLKASVRIHK 58
           TTS  NP +D+E   P+   A V+ ++
Sbjct: 212 TTSWNNPLEDEEQTSPLDYTAKVQFNR 238


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 11  KSTAVDYEETEKXXXXXXXXATTSMMNPYQDQETIRPIKLKASVRIHKTGSQVDL 65
           KS  +D E++E          TT M    Q    + P+ L+  V +HK    +DL
Sbjct: 388 KSNKLDSEKSEPLQLFKLYKTTTEMYLR-QVISRMPPVSLEMQVLLHKQTQLIDL 441


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.129    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,012
Number of Sequences: 5004
Number of extensions: 5482
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 2
length of query: 68
length of database: 2,362,478
effective HSP length: 48
effective length of query: 20
effective length of database: 2,122,286
effective search space: 42445720
effective search space used: 42445720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)