Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000226-TA|BGIBMGA000226-PA|IPR000618|Insect cuticle
protein
         (398 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.8  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   6.7  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    22   8.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 52   GSSYHLAHGTANGVVGGRFGGKDPATDT 79
            G S+ LA    NG+    +GG +   +T
Sbjct: 2069 GQSFSLADNNQNGLNAATYGGGEAGEET 2096


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 367 PAFSQSGNEDLGYVDE 382
           P  S SG +DLG  DE
Sbjct: 2   PHVSSSGGDDLGSTDE 17


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 13/45 (28%), Positives = 18/45 (40%)

Query: 123 PNEDPSYAFNFDTRTYSKNENADSRGDVKGHYSYVDDIGERHDVS 167
           PN +P+   +  T       +    GD  G  S VDD  E  + S
Sbjct: 60  PNLNPAVQGSSLTEGKRSKRSKRPNGDTNGDTSQVDDQNESLEAS 104


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,920
Number of Sequences: 317
Number of extensions: 5160
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 398
length of database: 114,650
effective HSP length: 58
effective length of query: 340
effective length of database: 96,264
effective search space: 32729760
effective search space used: 32729760
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 44 (21.8 bits)