Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000226-TA|BGIBMGA000226-PA|IPR000618|Insect cuticle
protein
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    28   2.0  
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    28   2.7  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    27   4.6  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    26   8.1  

>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 36/160 (22%), Positives = 58/160 (36%), Gaps = 7/160 (4%)

Query: 115 NKDDPFFDPNEDPSYAFNFDTRTYSKNENADSRGDVKGHYSYVDDIGERHDVSYIAGRDT 174
           ++DD   D ++  S + + D+ + S + ++DS    +   S  D        +  +   T
Sbjct: 279 SEDDSSSDSSDSESESSSEDSDSTSSSSDSDSSSSSEDGNSNTDTTTSGEVSAQSSTNST 338

Query: 175 GFHVSSAHPDNPGVIGSPFHRAPLVRGETKARGRTAVQRGLDGSYRFISAG-PDQRRTES 233
               S++  D      S  H   L R        T+ +        F   G P Q    S
Sbjct: 339 SSEESTSVKDEDS---SKIHDKSLKRKHEDDESSTSTKSSRTTKTPFTRVGDPSQWDFAS 395

Query: 234 SDSQGNVRGSYTFLDDKGVQRTVNYIAGPGIGYRIIKNNK 273
              + N   S+ F DD G     + I   G G+R  KN K
Sbjct: 396 PALRDN---SFNFEDDYGTLANRDLIVTRGKGFRQEKNKK 432


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 321 TAASGHVKPPPFQVSESEIPEGPAGPITSAETDNAPNLQTDGGYSQ 366
           T++SG      F +  +  P  P  P  ++E DNA +L    GY Q
Sbjct: 10  TSSSGKKNSAEFSIHSTSNPTNPEEPNITSEADNAEDLAA-LGYKQ 54


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 197 PLVRGETKARGRTAVQRGLDGSYRFISAGPDQRRTESSDSQG 238
           P  +G+ + +G+  ++  +  SY   SAG D    E +D QG
Sbjct: 11  PQPQGKHQRKGKKQLENKILHSYEEESAGFDSEELEDNDEQG 52


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 55  YHLAHGTANGVVGGRFGGKDPATDTVKETIYT 86
           Y+    TA+G V G     +PA  TV  TIY+
Sbjct: 160 YNTTLATASGTVPGTVEVVEPAVGTVTTTIYS 191


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,060,347
Number of Sequences: 5004
Number of extensions: 94977
Number of successful extensions: 169
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 166
Number of HSP's gapped (non-prelim): 4
length of query: 398
length of database: 2,362,478
effective HSP length: 74
effective length of query: 324
effective length of database: 1,992,182
effective search space: 645466968
effective search space used: 645466968
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 55 (26.2 bits)