GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000226-TA|BGIBMGA000226-PA|IPR000618|Insect cuticle
protein
         (398 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2791| Best HMM Match : MAM (HMM E-Value=0.057)                      36   0.076
SB_26082| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.31 
SB_42349| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.2  
SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.2  
SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8)            31   2.2  
SB_59764| Best HMM Match : Vicilin_N (HMM E-Value=0.5)                 30   2.9  
SB_43852| Best HMM Match : DnaJ (HMM E-Value=1.7e-37)                  30   2.9  
SB_40612| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14)          29   6.6  
SB_5525| Best HMM Match : zf-C3HC4 (HMM E-Value=6.2e-12)               29   6.6  
SB_47174| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.7  
SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)                29   8.7  
SB_5335| Best HMM Match : DEAD (HMM E-Value=0.34)                      29   8.7  
SB_44173| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.7  
SB_42806| Best HMM Match : MORN (HMM E-Value=0)                        29   8.7  
SB_30467| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.7  

>SB_2791| Best HMM Match : MAM (HMM E-Value=0.057)
          Length = 398

 Score = 35.5 bits (78), Expect = 0.076
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 182 HPDNPGVIGSPFHRAPLVRGETKARGRTA-VQRGLDGSYRFISAGPDQRRTESSDSQGNV 240
           +P++ GV+     +AP +  +   +  TA VQ  L+GSY F +   DQ +T  +  + N 
Sbjct: 19  NPNSSGVLTE--FKAPDIDADNYGQRLTAFVQPPLNGSYMFYTICDDQCKTWINKIEPNT 76

Query: 241 RGSYTFLDDKG 251
           +G   F++D G
Sbjct: 77  KGELAFIEDLG 87


>SB_26082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 33.5 bits (73), Expect = 0.31
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 202 ETKARGRTAVQRGLDGSYRFISAGPDQRRTESSDSQGNVRGSYTFLDDKGVQRTVNYIAG 261
           +T  +G    +RG+ G+YR IS    ++RT    ++  V+ +Y  + ++G +RT   I  
Sbjct: 18  KTNIQGHNRSERGVKGTYRDISE-RGEKRTYRDITERGVKRTYRDITERGEKRTYRDITE 76

Query: 262 PGI 264
            G+
Sbjct: 77  RGV 79



 Score = 29.9 bits (64), Expect = 3.8
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 200 RGETKARGRTAVQRGLDGSYRFISAGPDQRRTESSDSQGNVRGSYTFLDDKGVQRTVNYI 259
           RGE K   R   +RG+  +YR I+    ++RT    ++  V+ +Y  + ++GV+RT   I
Sbjct: 41  RGE-KRTYRDITERGVKRTYRDITER-GEKRTYRDITERGVKRTYRDITERGVKRTYRDI 98

Query: 260 AGPG 263
              G
Sbjct: 99  TERG 102


>SB_42349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 980

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 40/158 (25%), Positives = 62/158 (39%), Gaps = 10/158 (6%)

Query: 14  CALVRTQVIPGKSRANDGDYNTVNTDGSFDFGYANKDRGSSYHLAHGTANGVVGGRFGGK 73
           CA+   + I   S    GD+N +  D S D   + +D  SS   +  +++G   GR G  
Sbjct: 617 CAVESCREIETVSEVASGDFNNLGYDNSDDVFPSTED--SSEDQSRVSSDGGSIGRKGSP 674

Query: 74  DPAT---DTVKETIYTA---GPRGFRAKGPNVHRQLD--LDQRPRGPIGNKDDPFFDPNE 125
           +PA    DT   T+  A    P   R + P   RQ++   ++ P G      D       
Sbjct: 675 EPANGEPDTHNVTVIKATRRKPYQQRGRLPCQKRQVEGSPEKSPAGADEETADQEQAHQR 734

Query: 126 DPSYAFNFDTRTYSKNENADSRGDVKGHYSYVDDIGER 163
           D    F+ D    S + +     D  G  + +   GER
Sbjct: 735 DSGVGFSMDEGEKSASGDVTPTDDPLGVGTRIGVQGER 772


>SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1089

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 324 SGHVKPPPFQVSESEIPEGPAGPITSAETDNAPNLQTDGG 363
           SG  +  P + S S IP  P  P  S+ T+N+P L+T+ G
Sbjct: 913 SGSTRTSPIR-STSTIPSTPPPPGGSSSTENSPVLETERG 951


>SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8)
          Length = 796

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 109 PRGPIGNKDDPF--FDPNEDPSYAFNFDTRTYSKNENADSRGDVKGHYSYVDDIGERHDV 166
           P GP+     PF   +P  DPS    F   T    ++A   G V      V D+   HD 
Sbjct: 513 PDGPLSGHTRPFSSMEPLSDPSAGVFF---TCQVKDSAFGEGTVTDTMDTVSDVSSYHDD 569

Query: 167 SYIAGRDTGF 176
            +    D GF
Sbjct: 570 GFHDEADAGF 579


>SB_59764| Best HMM Match : Vicilin_N (HMM E-Value=0.5)
          Length = 302

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 15/60 (25%), Positives = 24/60 (40%)

Query: 316 KGPEGTAASGHVKPPPFQVSESEIPEGPAGPITSAETDNAPNLQTDGGYSQPAFSQSGNE 375
           +GPEG     ++  PP     +++P+ PA P T       P    D    +P   +   E
Sbjct: 82  RGPEGKPQKINMAGPPKPPRLAKVPDSPASPSTKRRAPAPPVKLDDKSTKKPCKEEQNTE 141


>SB_43852| Best HMM Match : DnaJ (HMM E-Value=1.7e-37)
          Length = 399

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 33  YNTVNTDGSFDFGYANKDRGSSYHLAHGTANGVVGGRFGGKDPAT---DTVKETIYTAG- 88
           YN    +G    G   KD  +  +  HG AN V    FGG +P +   D+    I   G 
Sbjct: 64  YNQFGEEG-LKSGVPEKDAWTQGYTFHGDANRVFREFFGGNNPFSELFDSYDPDIGFGGI 122

Query: 89  -PRGFRAKGPNVHRQLDL 105
             RG R + P + R+L L
Sbjct: 123 HGRGRRKQDPPIERELYL 140


>SB_40612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 215 LDGSYRFISAGPDQRRTESSDSQGNVRGSYTFLDDKG 251
           L+GSY F +   DQ +T  +  + N +G   F++D G
Sbjct: 3   LNGSYMFYTICDDQCKTWINKIEPNTKGELAFIEDLG 39


>SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14)
          Length = 966

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 104 DLDQRPRGPIGNKDDPFFDPNEDPSYAFNFDTRTYSKNENADSRGDVKGHYSYVDDIGER 163
           D D    G  GN  D   D N+   Y  + D   Y  N++ D+ GD   +    DD G+ 
Sbjct: 384 DSDGDDDGDDGNDGDD--DDNDGDDYGNDGDGGNYDGNDDDDNDGDDSCNDDDDDDYGDD 441

Query: 164 HD 165
           +D
Sbjct: 442 YD 443


>SB_5525| Best HMM Match : zf-C3HC4 (HMM E-Value=6.2e-12)
          Length = 389

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 318 PEGTAASGHVKPPPFQVSESEIPEGPAGPITS 349
           P   A S  V  PP++ SES    GP G + S
Sbjct: 39  PSSQAGSSSVTSPPYRSSESSPYRGPVGRVAS 70


>SB_47174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1198

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 80  VKETIYTAG-PRGFRAKGPNVHRQ---LDLDQRPRGPIGNK--DDPFFDPNEDPSYAF 131
           V E I   G PR   +   NV+R    +D ++RP  P  N   D+P+ D ++ PS++F
Sbjct: 854 VNEIIARFGCPRTLLSDRVNVNRMKRVIDKNERPIDPPDNDNTDEPYLDEDDLPSHSF 911


>SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
          Length = 382

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 317 GPEGTAASGHVKPPPFQVSESEIPEGPAGPITSAETDNAPNLQTDGGYSQPAFSQSGNED 376
           G  GTA+     PPP QVS    P+G A P+ S+     P   T    S   F+   N +
Sbjct: 114 GSAGTASKP--PPPPTQVSVHP-PQGQAPPVVSSARKAVPQPVTPATPSPGTFTDVPNTE 170

Query: 377 L 377
           +
Sbjct: 171 M 171


>SB_5335| Best HMM Match : DEAD (HMM E-Value=0.34)
          Length = 211

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 3/32 (9%)

Query: 86  TAGPRGFRAKGPNVHRQLDLDQRPRGPIGNKD 117
           T G   F+ KG  +H  L L   P GP GNKD
Sbjct: 83  TTGKAAFQIKGVTIHSLLKL---PVGPRGNKD 111


>SB_44173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 104 DLDQRPRGPIGNKDDPFFDPNEDPSYAFNFDTRTYSKNENADSRGDVKGHYSYVDD 159
           ++D    G I N DD   D N+D  Y  N D   +  +++     D  G+    DD
Sbjct: 75  NIDNDDDGNIDNDDDGTID-NDDDGYVDNVDDDNFDNDDDGHIDNDDDGNIDNDDD 129


>SB_42806| Best HMM Match : MORN (HMM E-Value=0)
          Length = 778

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 2/34 (5%)

Query: 161 GERHDVSYI-AGRDTGFHVSSAHPDNPGV-IGSP 192
           G R  VS + AG+++   V++A  DNPGV +G+P
Sbjct: 608 GARRTVSLVSAGKESQAKVATAESDNPGVELGAP 641


>SB_30467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 104 DLDQRPRGPIGNKDDPFFDPNEDPSYAFNFDTRTYSKNENADSRGDVKGHYSYVDD 159
           ++D    G I N DD   D N+D  Y  N D   +  +++     D  G+    DD
Sbjct: 58  NIDNDDDGNIDNDDDGTID-NDDDGYVDNVDDDNFDNDDDGHIDNDDDGNIDNDDD 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.313    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,607,398
Number of Sequences: 59808
Number of extensions: 742143
Number of successful extensions: 1235
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1228
Number of HSP's gapped (non-prelim): 17
length of query: 398
length of database: 16,821,457
effective HSP length: 84
effective length of query: 314
effective length of database: 11,797,585
effective search space: 3704441690
effective search space used: 3704441690
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 61 (28.7 bits)