Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000226-TA|BGIBMGA000226-PA|IPR000618|Insect cuticle
protein
(398 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen prot... 33 0.35
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 31 1.4
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 31 1.4
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 31 1.4
Z49938-3|CAA90188.1| 306|Caenorhabditis elegans Hypothetical pr... 30 2.5
AF024492-6|AAF98616.1| 277|Caenorhabditis elegans Hypothetical ... 30 3.3
AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans Prion-like-(q... 29 4.4
Z81131-1|CAB03423.4| 464|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z81063-2|CAB02953.1| 210|Caenorhabditis elegans Hypothetical pr... 29 7.6
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 7.6
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 7.6
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 7.6
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 7.6
>AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen protein
102 protein.
Length = 460
Score = 33.1 bits (72), Expect = 0.35
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 338 EIPEGPAGPITSAETDNAPNLQTDGGYSQPAF--SQSGNEDLGYVDEDAGYGGSKPTKGP 395
E P GPAGP +A D + G + P G D +AG G+K T P
Sbjct: 149 EGPAGPAGPAGNAGADGEAGAEGPAGEAGPPGPPGPDGKPGAAGSDGEAGAPGTKTTNAP 208
Query: 396 GD 397
G+
Sbjct: 209 GE 210
Score = 30.3 bits (65), Expect = 2.5
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 344 AGPITSAETDNAPNLQTDGGYSQPAFSQSGNEDLGYVDEDAGYGGSKPTKGPGDE 398
A P +A + AP + GG ++PA + E E AG G + PT G G E
Sbjct: 396 AAPEAAAAPEAAPAAEGAGGGAEPA--GAAPEAAAAAPEGAGGGEAPPTNGKGGE 448
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 31.1 bits (67), Expect = 1.4
Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 317 GPEGTAAS----GHVKPPPFQVSESEIPEGPAGPITSAETDNAPNLQTDGGYSQPAFSQS 372
GP+G + G P + S P GPAGP D AP + G + PA
Sbjct: 146 GPDGNPGAPGNDGEAGSPGTRSISSPGPAGPAGPPGPPGPDGAPGGGSGPGPAGPAGPPG 205
Query: 373 GNEDLGYVDEDAGYGGSKPTKGPGDE 398
+ + G D GG PG +
Sbjct: 206 PDGNPGSAGADGQPGGPGQDGAPGSD 231
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 31.1 bits (67), Expect = 1.4
Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 317 GPEGTAAS----GHVKPPPFQVSESEIPEGPAGPITSAETDNAPNLQTDGGYSQPAFSQS 372
GP+G + G P + S P GPAGP D AP + G + PA
Sbjct: 146 GPDGNPGAPGNDGEAGSPGTRSISSPGPAGPAGPPGPPGPDGAPGGGSGPGPAGPAGPPG 205
Query: 373 GNEDLGYVDEDAGYGGSKPTKGPGDE 398
+ + G D GG PG +
Sbjct: 206 PDGNPGSAGADGQPGGPGQDGAPGSD 231
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 31.1 bits (67), Expect = 1.4
Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 317 GPEGTAASGHVKPPPFQVSESEIPEGPA------GPITSAETDNAPNLQTDGGYSQPAFS 370
G + TA + PP S + PEGPA GP A +D P D G P
Sbjct: 125 GEDNTATFAPITCPPKDPSCVKCPEGPAGPPGPEGPAGPAGSDGQPGAPGDAGKDGPPGP 184
Query: 371 QSGNEDLGYVDEDAGYGGSKPTKGPGDE 398
+ D G + +AG G G E
Sbjct: 185 PGPDGDSG-PNGEAGPNGEPGAPGKDGE 211
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 31.1 bits (67), Expect = 1.4
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 26 SRANDGDYNTVNTDGSFDFGYANKDRGSSYHLAHGTANGVVGGRFGGKDPA 76
S AN G NT NT G F FG A GS+ + TA G + G PA
Sbjct: 33 STANTGG-NT-NTTGGFSFGSAQPSTGSTGLFGNSTATGSMFGGSSAAAPA 81
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 31.1 bits (67), Expect = 1.4
Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Query: 317 GPEGTAASGHVKPPPFQVSESEIPEGPAGPITSAETDNAPNLQTDGGYSQPAFSQSGNED 376
GP G SG P PF SE+ GP GP + AP GG P F+ SG
Sbjct: 186 GPSGAPPSGG-PPGPFNPSEAPPSGGPTGPF---DPSGAP---PSGGPPGP-FNPSGAPP 237
Query: 377 LGYVDEDAGYGGSKPTKGP 395
G G+ P+ GP
Sbjct: 238 SGGPPGPFDPSGAPPSGGP 256
>Z49938-3|CAA90188.1| 306|Caenorhabditis elegans Hypothetical
protein F38A3.2 protein.
Length = 306
Score = 30.3 bits (65), Expect = 2.5
Identities = 27/85 (31%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 317 GPEGTAASGHVKPPPFQVSESEIPEGPA---GPITSAETDNAPNLQTDGGYSQPAFSQSG 373
GP+G S P V E +P GPA GP + D A G P Q
Sbjct: 207 GPDGQPGSTGQDGAPGVVEEVAVPAGPAGAPGPAGAPGADGAAGAPGQPGQDGP---QGP 263
Query: 374 NEDLGYVDEDAGYGGSKPTKGPGDE 398
D G D AG G+ +GP E
Sbjct: 264 AGDAG-SDGAAGQPGAAGEQGPAGE 287
>AF024492-6|AAF98616.1| 277|Caenorhabditis elegans Hypothetical
protein F14F9.2 protein.
Length = 277
Score = 29.9 bits (64), Expect = 3.3
Identities = 48/178 (26%), Positives = 74/178 (41%), Gaps = 26/178 (14%)
Query: 86 TAGPRGFRAKG-PNVHRQLDLDQRPRGPIGNKDD----PFFD---PNEDPSYAF--NFDT 135
+A PR + P+VH + D P P K+D PF P E + + D
Sbjct: 19 SAAPRHHKHHSTPSVHLKTDAPPPPPQPTEQKEDVSDLPFIGTEGPAESQTVSVVDGSDA 78
Query: 136 RTYSKNENADSRGD--VKGHY----SYVDDIGERHDVSYIAGR---DTGFHVSSAHPDNP 186
S+ E A+ R D V G S + G+ D S+I ++ + D P
Sbjct: 79 PVESQTEPAEDRSDSPVIGSEGSDESQTESAGDVSDDSFIGSEAPVESQTEPAEDRSDAP 138
Query: 187 GVIGS--PF--HRAPLVRGETKARGRTAVQRGL-DGSYRFISAGPDQRRTESSDSQGN 239
IGS PF AP + E A +T + + DGS+ +S P + +TES + + +
Sbjct: 139 -FIGSDGPFIGSEAPFIGTEALAESQTELAGDVSDGSF-IVSEAPVESQTESGEDRSD 194
>AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 34,
isoform a protein.
Length = 1128
Score = 29.5 bits (63), Expect = 4.4
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 318 PEGTAASGHVKPPPFQVSESEIPEGPAGPITSAETDNAPNLQTDGGYSQPAFSQSGNEDL 377
PEG H++P P Q ++P+ P + P +G +Q + Q+ N+ L
Sbjct: 630 PEGYFIPHHMQPIPVQQGYQQMPQ-PGMGFNGMPATSQPGFNMEGSPAQMGYIQTANKPL 688
>Z81131-1|CAB03423.4| 464|Caenorhabditis elegans Hypothetical
protein T24D1.2 protein.
Length = 464
Score = 29.1 bits (62), Expect = 5.8
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 122 DPNEDPSYAFNFDTRTYSKNENADSRGD---VKGHYSYVDDIGERHDVSYIAGRDTGFHV 178
+P DP Y + S EN D+ D + + S V D+ + DV I GR H
Sbjct: 262 NPRRDPLYRSGLNNEDESDPENVDADSDDDEAQSNGSSVIDLSDDDDVLIIGGRG-AVHA 320
Query: 179 SSAHPDNP 186
H P
Sbjct: 321 DRNHIRQP 328
>Z81063-2|CAB02953.1| 210|Caenorhabditis elegans Hypothetical
protein F15D3.3 protein.
Length = 210
Score = 28.7 bits (61), Expect = 7.6
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 340 PEGPAGPITSAETDNAPNLQTDGGYSQPAFSQSGNEDLGYVDEDAGYGGSKP-TKGPGD 397
P+GP GP +A D AP + G A ++G E G DA Y P T G G+
Sbjct: 136 PQGPEGPAGAAGQDGAPGKDGETG-PDGAAGEAGGE--GAPGPDAAYCPCPPRTVGYGE 191
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 28.7 bits (61), Expect = 7.6
Identities = 23/63 (36%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 340 PEGPAGPITSAETDNAPNLQTDGGYSQP-AFSQSGNEDLGYVDE-----DAGYGGSKPTK 393
P GP GP A D AP GG +P A Q G + G AG G+ T
Sbjct: 184 PAGPPGPAGPAGNDGAPG--APGGPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTG 241
Query: 394 GPG 396
GPG
Sbjct: 242 GPG 244
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 28.7 bits (61), Expect = 7.6
Identities = 23/63 (36%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 340 PEGPAGPITSAETDNAPNLQTDGGYSQP-AFSQSGNEDLGYVDE-----DAGYGGSKPTK 393
P GP GP A D AP GG +P A Q G + G AG G+ T
Sbjct: 184 PAGPPGPAGPAGNDGAPG--APGGPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTG 241
Query: 394 GPG 396
GPG
Sbjct: 242 GPG 244
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 28.7 bits (61), Expect = 7.6
Identities = 23/63 (36%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 340 PEGPAGPITSAETDNAPNLQTDGGYSQP-AFSQSGNEDLGYVDE-----DAGYGGSKPTK 393
P GP GP A D AP GG +P A Q G + G AG G+ T
Sbjct: 184 PAGPPGPAGPAGNDGAPG--APGGPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTG 241
Query: 394 GPG 396
GPG
Sbjct: 242 GPG 244
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 28.7 bits (61), Expect = 7.6
Identities = 23/63 (36%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 340 PEGPAGPITSAETDNAPNLQTDGGYSQP-AFSQSGNEDLGYVDE-----DAGYGGSKPTK 393
P GP GP A D AP GG +P A Q G + G AG G+ T
Sbjct: 184 PAGPPGPAGPAGNDGAPG--APGGPGEPGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTG 241
Query: 394 GPG 396
GPG
Sbjct: 242 GPG 244
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.313 0.136 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,328,149
Number of Sequences: 27539
Number of extensions: 549486
Number of successful extensions: 1017
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 996
Number of HSP's gapped (non-prelim): 25
length of query: 398
length of database: 12,573,161
effective HSP length: 83
effective length of query: 315
effective length of database: 10,287,424
effective search space: 3240538560
effective search space used: 3240538560
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 61 (28.7 bits)
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