GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000226-TA|BGIBMGA000226-PA|IPR000618|Insect cuticle
protein
         (398 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    23   3.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   6.0  
DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    22   8.0  
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    22   8.0  
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    22   8.0  
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    22   8.0  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    22   8.0  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   8.0  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    22   8.0  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    22   8.0  

>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 329 PPPFQVSESEIPEGPAGPITSAETDNAPNLQTDG 362
           P PF V     P  P GP  S + +  P L+  G
Sbjct: 347 PVPFPVYYGNFPPRPMGPFVSIQ-EQIPRLRYIG 379


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 121  FDPNEDPSYAFNFDTRTYSKNENADSRGDVKGH 153
            F    DPS A  F T  +  N ++ + G   GH
Sbjct: 1733 FREEMDPSKAMQFQTFPHPGNGHSGTMGPPVGH 1765



 Score = 22.2 bits (45), Expect = 8.0
 Identities = 12/39 (30%), Positives = 15/39 (38%)

Query: 341  EGPAGPITSAETDNAPNLQTDGGYSQPAFSQSGNEDLGY 379
            E P+GP TS   D+         +  P       E LGY
Sbjct: 974  EAPSGPPTSIRVDDLDQHTLKVTWKPPPREDWNGEILGY 1012


>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 9/23 (39%), Positives = 10/23 (43%)

Query: 329 PPPFQVSESEIPEGPAGPITSAE 351
           P PF V     P  P GP  S +
Sbjct: 114 PVPFPVYYGNFPPRPMGPFVSMQ 136


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 9/23 (39%), Positives = 10/23 (43%)

Query: 329 PPPFQVSESEIPEGPAGPITSAE 351
           P PF V     P  P GP  S +
Sbjct: 114 PVPFPVYYGNFPPRPMGPFVSMQ 136


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 9/23 (39%), Positives = 10/23 (43%)

Query: 329 PPPFQVSESEIPEGPAGPITSAE 351
           P PF V     P  P GP  S +
Sbjct: 114 PVPFPVYYGNFPPRPMGPFVSMQ 136


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 9/23 (39%), Positives = 10/23 (43%)

Query: 329 PPPFQVSESEIPEGPAGPITSAE 351
           P PF V     P  P GP  S +
Sbjct: 114 PVPFPVYYGNFPPRPMGPFVSMQ 136


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 9/23 (39%), Positives = 10/23 (43%)

Query: 329 PPPFQVSESEIPEGPAGPITSAE 351
           P PF V     P  P GP  S +
Sbjct: 347 PVPFPVYYGNFPPRPMGPFVSIQ 369


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 9/23 (39%), Positives = 10/23 (43%)

Query: 329 PPPFQVSESEIPEGPAGPITSAE 351
           P PF V     P  P GP  S +
Sbjct: 347 PVPFPVYYGNFPPRPMGPFVSIQ 369


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 9/23 (39%), Positives = 10/23 (43%)

Query: 329 PPPFQVSESEIPEGPAGPITSAE 351
           P PF V     P  P GP  S +
Sbjct: 347 PVPFPVYYGNFPPRPMGPFVSIQ 369


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 9/23 (39%), Positives = 10/23 (43%)

Query: 329 PPPFQVSESEIPEGPAGPITSAE 351
           P PF V     P  P GP  S +
Sbjct: 336 PVPFPVYYGNFPPRPMGPFVSIQ 358


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,130
Number of Sequences: 429
Number of extensions: 6666
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 11
length of query: 398
length of database: 140,377
effective HSP length: 59
effective length of query: 339
effective length of database: 115,066
effective search space: 39007374
effective search space used: 39007374
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 45 (22.2 bits)